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Items: 15

1.

Multimodel pathway enrichment methods for functional evaluation of expression regulation.

Kirik U, Cifani P, Albrekt AS, Lindstedt M, Heyden A, Levander F.

J Proteome Res. 2012 May 4;11(5):2955-67. doi: 10.1021/pr300038b. Epub 2012 Apr 21.

PMID:
22471554
2.

Functional genomics and proteomics in the clinical neurosciences: data mining and bioinformatics.

Phan JH, Quo CF, Wang MD.

Prog Brain Res. 2006;158:83-108. Review.

PMID:
17027692
3.

A bioinformatics perspective on proteomics: data storage, analysis, and integration.

Kremer A, Schneider R, Terstappen GC.

Biosci Rep. 2005 Feb-Apr;25(1-2):95-106. Review.

PMID:
16222422
4.

Pathway mapping tools for analysis of high content data.

Ekins S, Nikolsky Y, Bugrim A, Kirillov E, Nikolskaya T.

Methods Mol Biol. 2007;356:319-50. Review.

PMID:
16988414
5.

Proteomics in postgenomic neuroscience: the end of the beginning.

Choudhary J, Grant SG.

Nat Neurosci. 2004 May;7(5):440-5. Review.

PMID:
15114355
6.

Integration of bioinformatics resources for functional analysis of gene expression and proteomic data.

Huang H, Hu ZZ, Arighi CN, Wu CH.

Front Biosci. 2007 Sep 1;12:5071-88. Review.

PMID:
17569631
7.

Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments.

Wong JW, Sullivan MJ, Cagney G.

Brief Bioinform. 2008 Mar;9(2):156-65. Epub 2007 Sep 28. Review.

PMID:
17905794
8.

Proteomic and computational methods in systems modeling of cellular signaling.

Kleppe R, Kjarland E, Selheim F.

Curr Pharm Biotechnol. 2006 Jun;7(3):135-45. Review.

PMID:
16789899
9.

Data merging for integrated microarray and proteomic analysis.

Waters KM, Pounds JG, Thrall BD.

Brief Funct Genomic Proteomic. 2006 Dec;5(4):261-72. Epub 2006 May 10. Review.

PMID:
16772273
10.

Elective affinities--bioinformatic analysis of proteomic mass spectrometry data.

Li X, Pizarro A, Grosser T.

Arch Physiol Biochem. 2009 Dec;115(5):311-9. doi: 10.3109/13813450903390039. Review.

PMID:
19911947
11.

Proteomics by mass spectrometry--go big or go home?

Khan MF, Bennett MJ, Jumper CC, Percy AJ, Silva LP, Schriemer DC.

J Pharm Biomed Anal. 2011 Jun 25;55(4):832-41. doi: 10.1016/j.jpba.2011.02.012. Epub 2011 Feb 17. Review.

PMID:
21382686
12.

Omics technologies, data and bioinformatics principles.

Schneider MV, Orchard S.

Methods Mol Biol. 2011;719:3-30. doi: 10.1007/978-1-61779-027-0_1. Review.

PMID:
21370077
13.

Bioinformatics approaches for the functional interpretation of protein lists: from ontology term enrichment to network analysis.

Laukens K, Naulaerts S, Berghe WV.

Proteomics. 2015 Mar;15(5-6):981-96. doi: 10.1002/pmic.201400296. Epub 2015 Feb 20. Review.

PMID:
25430566
14.

PROTEINCHALLENGE: crowd sourcing in proteomics analysis and software development.

Martin SF, Falkenberg H, Dyrlund TF, Khoudoli GA, Mageean CJ, Linding R.

J Proteomics. 2013 Aug 2;88:41-6. doi: 10.1016/j.jprot.2012.11.014. Epub 2012 Dec 7. Review.

15.

Searching for a needle in a stack of needles: challenges in metaproteomics data analysis.

Muth T, Benndorf D, Reichl U, Rapp E, Martens L.

Mol Biosyst. 2013 Apr 5;9(4):578-85. doi: 10.1039/c2mb25415h. Review.

PMID:
23238088

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