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Items: 19

1.

Nucleosome positioning: bringing order to the eukaryotic genome.

Iyer VR.

Trends Cell Biol. 2012 May;22(5):250-6. doi: 10.1016/j.tcb.2012.02.004. Epub 2012 Mar 14. Review.

2.

Rules and regulation in the primary structure of chromatin.

Rando OJ, Ahmad K.

Curr Opin Cell Biol. 2007 Jun;19(3):250-6. Epub 2007 Apr 26. Review.

PMID:
17466507
3.

Nucleosome positioning in yeasts: methods, maps, and mechanisms.

Lieleg C, Krietenstein N, Walker M, Korber P.

Chromosoma. 2015 Jun;124(2):131-51. doi: 10.1007/s00412-014-0501-x. Epub 2014 Dec 23. Review.

PMID:
25529773
4.

Changing the DNA landscape: putting a SPN on chromatin.

Formosa T.

Curr Top Microbiol Immunol. 2003;274:171-201. Review.

PMID:
12596908
5.

What controls nucleosome positions?

Segal E, Widom J.

Trends Genet. 2009 Aug;25(8):335-43. doi: 10.1016/j.tig.2009.06.002. Epub 2009 Jul 10. Review.

6.

Active nucleosome positioning beyond intrinsic biophysics is revealed by in vitro reconstitution.

Korber P.

Biochem Soc Trans. 2012 Apr;40(2):377-82. doi: 10.1042/BST20110730. Review.

PMID:
22435815
7.

Functional roles of nucleosome stability and dynamics.

Chereji RV, Morozov AV.

Brief Funct Genomics. 2015 Jan;14(1):50-60. doi: 10.1093/bfgp/elu038. Epub 2014 Sep 30. Review.

8.

Mechanisms underlying nucleosome positioning in vivo.

Hughes AL, Rando OJ.

Annu Rev Biophys. 2014;43:41-63. doi: 10.1146/annurev-biophys-051013-023114. Review.

PMID:
24702039
9.

A structural perspective on the where, how, why, and what of nucleosome positioning.

Arya G, Maitra A, Grigoryev SA.

J Biomol Struct Dyn. 2010 Jun;27(6):803-20. Review.

PMID:
20232935
10.

Predicting nucleosome positioning in genomes: physical and bioinformatic approaches.

Scipioni A, De Santis P.

Biophys Chem. 2011 May;155(2-3):53-64. doi: 10.1016/j.bpc.2011.03.006. Epub 2011 Apr 9. Review.

PMID:
21482020
11.

Genomic studies and computational predictions of nucleosome positions and formation energies.

Tolkunov D, Morozov AV.

Adv Protein Chem Struct Biol. 2010;79:1-57. doi: 10.1016/S1876-1623(10)79001-5. Review.

PMID:
20621280
12.

DNA structure, nucleosome placement and chromatin remodelling: a perspective.

Travers AA, Vaillant C, Arneodo A, Muskhelishvili G.

Biochem Soc Trans. 2012 Apr;40(2):335-40. doi: 10.1042/BST20110757. Review.

PMID:
22435808
13.

Nucleosome positioning and gene regulation.

Lu Q, Wallrath LL, Elgin SC.

J Cell Biochem. 1994 May;55(1):83-92. Review.

PMID:
8083303
14.

Nucleosome structural studies.

Tan S, Davey CA.

Curr Opin Struct Biol. 2011 Feb;21(1):128-36. doi: 10.1016/j.sbi.2010.11.006. Epub 2010 Dec 19. Review.

15.

Nucleosome mobilization and positioning by ISWI-containing chromatin-remodeling factors.

Längst G, Becker PB.

J Cell Sci. 2001 Jul;114(Pt 14):2561-8. Review.

16.

Determinants and dynamics of genome accessibility.

Bell O, Tiwari VK, Thomä NH, Schübeler D.

Nat Rev Genet. 2011 Jul 12;12(8):554-64. doi: 10.1038/nrg3017. Review.

PMID:
21747402
17.

Nucleosome positioning: how is it established, and why does it matter?

Radman-Livaja M, Rando OJ.

Dev Biol. 2010 Mar 15;339(2):258-66. doi: 10.1016/j.ydbio.2009.06.012. Epub 2009 Jun 13. Review.

18.

Histone exchange, chromatin structure and the regulation of transcription.

Venkatesh S, Workman JL.

Nat Rev Mol Cell Biol. 2015 Mar;16(3):178-89. doi: 10.1038/nrm3941. Epub 2015 Feb 4. Review.

PMID:
25650798
19.

Contributions of Sequence to the Higher-Order Structures of DNA.

Todolli S, Perez PJ, Clauvelin N, Olson WK.

Biophys J. 2017 Feb 7;112(3):416-426. doi: 10.1016/j.bpj.2016.11.017. Epub 2016 Dec 9. Review.

PMID:
27955889

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