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Items: 1 to 20 of 35

1.

Efficient key pathway mining: combining networks and OMICS data.

Alcaraz N, Friedrich T, Kötzing T, Krohmer A, Müller J, Pauling J, Baumbach J.

Integr Biol (Camb). 2012 Jul;4(7):756-64. doi: 10.1039/c2ib00133k. Epub 2012 Feb 21.

PMID:
22353882
2.

Where are we in genomics?

Hocquette JF.

J Physiol Pharmacol. 2005 Jun;56 Suppl 3:37-70. Review.

PMID:
16077195
3.

Systematic deciphering of cancer genome networks.

Fendler B, Atwal G.

Yale J Biol Med. 2012 Sep;85(3):339-45. Epub 2012 Sep 25. Review.

4.

Cancer systems biology: exploring cancer-associated genes on cellular networks.

Wang E, Lenferink A, O'Connor-McCourt M.

Cell Mol Life Sci. 2007 Jul;64(14):1752-62. Review.

PMID:
17415519
5.

Computational and experimental approaches for modeling gene regulatory networks.

Goutsias J, Lee NH.

Curr Pharm Des. 2007;13(14):1415-36. Review.

PMID:
17504165
6.
7.

Bacterial molecular networks: bridging the gap between functional genomics and dynamical modelling.

van Helden J, Toussaint A, Thieffry D.

Methods Mol Biol. 2012;804:1-11. doi: 10.1007/978-1-61779-361-5_1. Review.

PMID:
22144145
8.

Gene regulatory network inference: data integration in dynamic models-a review.

Hecker M, Lambeck S, Toepfer S, van Someren E, Guthke R.

Biosystems. 2009 Apr;96(1):86-103. doi: 10.1016/j.biosystems.2008.12.004. Epub 2008 Dec 27. Review.

PMID:
19150482
9.

Cancer omics: from regulatory networks to clinical outcomes.

Tang B, Hsu PY, Huang TH, Jin VX.

Cancer Lett. 2013 Nov 1;340(2):277-83. doi: 10.1016/j.canlet.2012.11.033. Epub 2012 Nov 29. Review.

PMID:
23201140
10.

Pathways and promoter networks analysis provides systems topology for systems biology approaches.

Nelson PJ, Werner T.

Semin Nephrol. 2010 Sep;30(5):477-86. doi: 10.1016/j.semnephrol.2010.07.005. Review.

PMID:
21044759
11.

Designing microarray and RNA-Seq experiments for greater systems biology discovery in modern plant genomics.

Yang C, Wei H.

Mol Plant. 2015 Feb;8(2):196-206. doi: 10.1016/j.molp.2014.11.012. Epub 2014 Dec 19. Review.

12.

Cancer systems biology in the genome sequencing era: part 1, dissecting and modeling of tumor clones and their networks.

Wang E, Zou J, Zaman N, Beitel LK, Trifiro M, Paliouras M.

Semin Cancer Biol. 2013 Aug;23(4):279-85. doi: 10.1016/j.semcancer.2013.06.002. Epub 2013 Jun 19. Review.

PMID:
23791722
13.

Omics meet networks - using systems approaches to infer regulatory networks in plants.

Moreno-Risueno MA, Busch W, Benfey PN.

Curr Opin Plant Biol. 2010 Apr;13(2):126-31. doi: 10.1016/j.pbi.2009.11.005. Epub 2009 Dec 28. Review.

14.

Integration, visualization and analysis of human interactome.

Pastrello C, Pasini E, Kotlyar M, Otasek D, Wong S, Sangrar W, Rahmati S, Jurisica I.

Biochem Biophys Res Commun. 2014 Mar 21;445(4):757-73. doi: 10.1016/j.bbrc.2014.01.151. Epub 2014 Feb 1. Review.

PMID:
24491561
15.

A survey on computational approaches to identifying disease biomarkers based on molecular networks.

Qin G, Zhao XM.

J Theor Biol. 2014 Dec 7;362:9-16. doi: 10.1016/j.jtbi.2014.06.007. Epub 2014 Jun 12. Review.

PMID:
24931674
16.

Network inference and network response identification: moving genome-scale data to the next level of biological discovery.

Veiga DF, Dutta B, Balázsi G.

Mol Biosyst. 2010 Mar;6(3):469-80. doi: 10.1039/b916989j. Epub 2009 Dec 11. Review.

17.

Molecular profiles to biology and pathways: a systems biology approach.

Van Laere S, Dirix L, Vermeulen P.

Chin J Cancer. 2016 Jun 16;35(1):53. doi: 10.1186/s40880-016-0112-4. Review.

18.

From molecules to cellular networks: past and future outlook.

Fang X, Wang J.

Phys Biol. 2017 Feb 16;14(1):013003. doi: 10.1088/1478-3975/aa5b6a. Review.

PMID:
28140350
19.

Neuroscience in the era of functional genomics and systems biology.

Geschwind DH, Konopka G.

Nature. 2009 Oct 15;461(7266):908-15. doi: 10.1038/nature08537. Review.

20.

Analyzing the biology on the system level.

Tong W.

Genomics Proteomics Bioinformatics. 2004 Feb;2(1):6-14. Review.

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