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Items: 7

1.

TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data.

Asmann YW, Middha S, Hossain A, Baheti S, Li Y, Chai HS, Sun Z, Duffy PH, Hadad AA, Nair A, Liu X, Zhang Y, Klee EW, Kalari KR, Kocher JP.

Bioinformatics. 2012 Jan 15;28(2):277-8. doi: 10.1093/bioinformatics/btr612. Epub 2011 Nov 15.

2.

Computational and bioinformatics frameworks for next-generation whole exome and genome sequencing.

Dolled-Filhart MP, Lee M Jr, Ou-Yang CW, Haraksingh RR, Lin JC.

ScientificWorldJournal. 2013;2013:730210. doi: 10.1155/2013/730210. Epub 2013 Jan 13. Review.

3.

A beginners guide to SNP calling from high-throughput DNA-sequencing data.

Altmann A, Weber P, Bader D, Preuss M, Binder EB, Müller-Myhsok B.

Hum Genet. 2012 Oct;131(10):1541-54. doi: 10.1007/s00439-012-1213-z. Epub 2012 Aug 11. Review.

PMID:
22886560
4.

The Genome Sequencer FLX System--longer reads, more applications, straight forward bioinformatics and more complete data sets.

Droege M, Hill B.

J Biotechnol. 2008 Aug 31;136(1-2):3-10. doi: 10.1016/j.jbiotec.2008.03.021. Epub 2008 Jun 21. Review.

PMID:
18616967
5.

Using CellMiner 1.6 for Systems Pharmacology and Genomic Analysis of the NCI-60.

Reinhold WC, Sunshine M, Varma S, Doroshow JH, Pommier Y.

Clin Cancer Res. 2015 Sep 1;21(17):3841-52. doi: 10.1158/1078-0432.CCR-15-0335. Epub 2015 Jun 5. Review.

6.

Informatics and clinical genome sequencing: opening the black box.

Moorthie S, Hall A, Wright CF.

Genet Med. 2013 Mar;15(3):165-71. doi: 10.1038/gim.2012.116. Epub 2012 Sep 13. Review.

PMID:
22975759
7.

Review of current methods, applications, and data management for the bioinformatics analysis of whole exome sequencing.

Bao R, Huang L, Andrade J, Tan W, Kibbe WA, Jiang H, Feng G.

Cancer Inform. 2014 Sep 21;13(Suppl 2):67-82. doi: 10.4137/CIN.S13779. eCollection 2014. Review.

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