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Items: 9

1.

Direct maximization of protein identifications from tandem mass spectra.

Spivak M, Weston J, Tomazela D, MacCoss MJ, Noble WS.

Mol Cell Proteomics. 2012 Feb;11(2):M111.012161. doi: 10.1074/mcp.M111.012161. Epub 2011 Nov 3.

2.

Current algorithmic solutions for peptide-based proteomics data generation and identification.

Hoopmann MR, Moritz RL.

Curr Opin Biotechnol. 2013 Feb;24(1):31-8. doi: 10.1016/j.copbio.2012.10.013. Epub 2012 Nov 8. Review.

3.

Protein identification by tandem mass spectrometry and sequence database searching.

Nesvizhskii AI.

Methods Mol Biol. 2007;367:87-119. Review.

PMID:
17185772
4.

Algorithms for the de novo sequencing of peptides from tandem mass spectra.

Allmer J.

Expert Rev Proteomics. 2011 Oct;8(5):645-57. doi: 10.1586/epr.11.54. Review.

PMID:
21999834
5.

Elective affinities--bioinformatic analysis of proteomic mass spectrometry data.

Li X, Pizarro A, Grosser T.

Arch Physiol Biochem. 2009 Dec;115(5):311-9. doi: 10.3109/13813450903390039. Review.

PMID:
19911947
6.

A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics.

Nesvizhskii AI.

J Proteomics. 2010 Oct 10;73(11):2092-123. doi: 10.1016/j.jprot.2010.08.009. Epub 2010 Sep 8. Review.

7.

What's driving false discovery rates?

Tabb DL.

J Proteome Res. 2008 Jan;7(1):45-6. Epub 2007 Dec 15. Review.

8.

Verification of single-peptide protein identifications by the application of complementary database search algorithms.

Rohrbough JG, Breci L, Merchant N, Miller S, Haynes PA.

J Biomol Tech. 2006 Dec;17(5):327-32. Review.

9.

Inference and validation of protein identifications.

Claassen M.

Mol Cell Proteomics. 2012 Nov;11(11):1097-104. doi: 10.1074/mcp.R111.014795. Epub 2012 Aug 3. Review.

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