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Items: 1 to 20 of 30

1.

Resources and costs for microbial sequence analysis evaluated using virtual machines and cloud computing.

Angiuoli SV, White JR, Matalka M, White O, Fricke WF.

PLoS One. 2011;6(10):e26624. doi: 10.1371/journal.pone.0026624. Epub 2011 Oct 19.

2.

[A review on the bioinformatics pipelines for metagenomic research].

Ye DD, Fan MM, Guan Q, Chen HJ, Ma ZS.

Dongwuxue Yanjiu. 2012 Dec;33(6):574-85. doi: 10.3724/SP.J.1141.2012.06574. Review. Chinese.

3.

Metagenomic pyrosequencing and microbial identification.

Petrosino JF, Highlander S, Luna RA, Gibbs RA, Versalovic J.

Clin Chem. 2009 May;55(5):856-66. doi: 10.1373/clinchem.2008.107565. Epub 2009 Mar 5. Review.

4.

Use of whole genome shotgun metagenomics: a practical guide for the microbiome-minded physician scientist.

Ma J, Prince A, Aagaard KM.

Semin Reprod Med. 2014 Jan;32(1):5-13. doi: 10.1055/s-0033-1361817. Epub 2014 Jan 3. Review.

PMID:
24390915
5.

From genomics to metagenomics.

Desai N, Antonopoulos D, Gilbert JA, Glass EM, Meyer F.

Curr Opin Biotechnol. 2012 Feb;23(1):72-6. doi: 10.1016/j.copbio.2011.12.017. Epub 2012 Jan 5. Review.

PMID:
22227326
6.

Computational methods for the analysis of tag sequences in metagenomics studies.

Chang Q, Luan Y, Chen T, Fuhrman JA, Sun F.

Front Biosci (Schol Ed). 2012 Jun 1;4:1333-43. Review.

PMID:
22652875
7.

Web Resources for Metagenomics Studies.

Dudhagara P, Bhavsar S, Bhagat C, Ghelani A, Bhatt S, Patel R.

Genomics Proteomics Bioinformatics. 2015 Oct;13(5):296-303. doi: 10.1016/j.gpb.2015.10.003. Epub 2015 Nov 18. Review.

8.

High throughput sequencing methods for microbiome profiling: application to food animal systems.

Highlander SK.

Anim Health Res Rev. 2012 Jun;13(1):40-53. doi: 10.1017/S1466252312000126. Review.

PMID:
22853944
9.

Microbial bioinformatics 2020.

Pallen MJ.

Microb Biotechnol. 2016 Sep;9(5):681-6. doi: 10.1111/1751-7915.12389. Epub 2016 Jul 29. Review.

10.

Bioinformatics clouds for big data manipulation.

Dai L, Gao X, Guo Y, Xiao J, Zhang Z.

Biol Direct. 2012 Nov 28;7:43; discussion 43. doi: 10.1186/1745-6150-7-43. Review.

11.

Metagenomics and Bioinformatics in Microbial Ecology: Current Status and Beyond.

Hiraoka S, Yang CC, Iwasaki W.

Microbes Environ. 2016 Sep 29;31(3):204-12. doi: 10.1264/jsme2.ME16024. Epub 2016 Jul 5. Review.

12.

Whole genome sequencing in clinical and public health microbiology.

Kwong JC, McCallum N, Sintchenko V, Howden BP.

Pathology. 2015 Apr;47(3):199-210. doi: 10.1097/PAT.0000000000000235. Review.

13.

Integrative workflows for metagenomic analysis.

Ladoukakis E, Kolisis FN, Chatziioannou AA.

Front Cell Dev Biol. 2014 Nov 19;2:70. doi: 10.3389/fcell.2014.00070. eCollection 2014. Review.

14.

Survey of (Meta)genomic Approaches for Understanding Microbial Community Dynamics.

Sharma A, Lal R.

Indian J Microbiol. 2017 Mar;57(1):23-38. doi: 10.1007/s12088-016-0629-x. Epub 2016 Nov 11. Review.

PMID:
28148977
15.

Bacterial genome sequencing in clinical microbiology: a pathogen-oriented review.

Tagini F, Greub G.

Eur J Clin Microbiol Infect Dis. 2017 Nov;36(11):2007-2020. doi: 10.1007/s10096-017-3024-6. Epub 2017 Jun 21. Review.

16.

Computational solutions to large-scale data management and analysis.

Schadt EE, Linderman MD, Sorenson J, Lee L, Nolan GP.

Nat Rev Genet. 2010 Sep;11(9):647-57. doi: 10.1038/nrg2857. Review.

17.

Genomics pipelines and data integration: challenges and opportunities in the research setting.

Davis-Turak J, Courtney SM, Hazard ES, Glen WB Jr, da Silveira WA, Wesselman T, Harbin LP, Wolf BJ, Chung D, Hardiman G.

Expert Rev Mol Diagn. 2017 Mar;17(3):225-237. doi: 10.1080/14737159.2017.1282822. Epub 2017 Jan 25. Review.

PMID:
28092471
18.

The Road to Metagenomics: From Microbiology to DNA Sequencing Technologies and Bioinformatics.

Escobar-Zepeda A, Vera-Ponce de León A, Sanchez-Flores A.

Front Genet. 2015 Dec 17;6:348. doi: 10.3389/fgene.2015.00348. eCollection 2015. Review.

19.

Impact of single-cell genomics and metagenomics on the emerging view of extremophile "microbial dark matter".

Hedlund BP, Dodsworth JA, Murugapiran SK, Rinke C, Woyke T.

Extremophiles. 2014 Sep;18(5):865-75. doi: 10.1007/s00792-014-0664-7. Epub 2014 Aug 12. Review.

PMID:
25113821
20.

Bacterial genome sequencing in the clinic: bioinformatic challenges and solutions.

Fricke WF, Rasko DA.

Nat Rev Genet. 2014 Jan;15(1):49-55. doi: 10.1038/nrg3624. Epub 2013 Nov 26. Review.

PMID:
24281148

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