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Items: 11

1.

Comparative studies of de novo assembly tools for next-generation sequencing technologies.

Lin Y, Li J, Shen H, Zhang L, Papasian CJ, Deng HW.

Bioinformatics. 2011 Aug 1;27(15):2031-7. doi: 10.1093/bioinformatics/btr319. Epub 2011 Jun 2.

2.

Assembly algorithms for next-generation sequencing data.

Miller JR, Koren S, Sutton G.

Genomics. 2010 Jun;95(6):315-27. doi: 10.1016/j.ygeno.2010.03.001. Epub 2010 Mar 6. Review.

3.

De novo assembly of short sequence reads.

Paszkiewicz K, Studholme DJ.

Brief Bioinform. 2010 Sep;11(5):457-72. doi: 10.1093/bib/bbq020. Epub 2010 Aug 19. Review.

PMID:
20724458
4.

Sequencing and genome assembly using next-generation technologies.

Nagarajan N, Pop M.

Methods Mol Biol. 2010;673:1-17. doi: 10.1007/978-1-60761-842-3_1. Review.

PMID:
20835789
5.

De novo sequencing of plant genomes using second-generation technologies.

Imelfort M, Edwards D.

Brief Bioinform. 2009 Nov;10(6):609-18. doi: 10.1093/bib/bbp039. Review.

PMID:
19933209
6.

Sequence assembly using next generation sequencing data--challenges and solutions.

Chin FY, Leung HC, Yiu SM.

Sci China Life Sci. 2014 Nov;57(11):1140-8. doi: 10.1007/s11427-014-4752-9. Epub 2014 Oct 17. Review.

PMID:
25326069
7.

Evaluation of next-generation sequencing software in mapping and assembly.

Bao S, Jiang R, Kwan W, Wang B, Ma X, Song YQ.

J Hum Genet. 2011 Jun;56(6):406-14. doi: 10.1038/jhg.2011.43. Epub 2011 Apr 28. Review.

PMID:
21525877
8.

Next-generation sequencing of vertebrate experimental organisms.

Turner DJ, Keane TM, Sudbery I, Adams DJ.

Mamm Genome. 2009 Jun;20(6):327-38. doi: 10.1007/s00335-009-9187-4. Epub 2009 May 19. Review.

9.

Sense from sequence reads: methods for alignment and assembly.

Flicek P, Birney E.

Nat Methods. 2009 Nov;6(11 Suppl):S6-S12. doi: 10.1038/nmeth.1376. Review.

PMID:
19844229
10.

Base-calling for next-generation sequencing platforms.

Ledergerber C, Dessimoz C.

Brief Bioinform. 2011 Sep;12(5):489-97. doi: 10.1093/bib/bbq077. Epub 2011 Jan 18. Review.

11.

Molecular and Morphometric Tools for Next-Generation Pathology Diagnosis of Colon Carcinoma.

Fisher Y, Hershkovitz D.

Isr Med Assoc J. 2016 Jul;18(7):426-432. Review. No abstract available.

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