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Items: 11

1.

MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S.

Mol Biol Evol. 2011 Oct;28(10):2731-9. doi: 10.1093/molbev/msr121.

2.

Phylogenetic analysis in molecular evolutionary genetics.

Nei M.

Annu Rev Genet. 1996;30:371-403. Review.

PMID:
8982459
3.

Using models of nucleotide evolution to build phylogenetic trees.

Bos DH, Posada D.

Dev Comp Immunol. 2005;29(3):211-27. Review.

PMID:
15572070
4.

Inferring trees.

Whelan S.

Methods Mol Biol. 2008;452:287-309. doi: 10.1007/978-1-60327-159-2_14. Review.

PMID:
18566770
5.

[A bird's eye view of the algorithms and software packages for reconstructing phylogenetic trees].

Zhang LN, Rong CH, He Y, Guan Q, He B, Zhu XW, Liu JN, Chen HJ.

Dongwuxue Yanjiu. 2013 Dec;34(6):640-50. Review. Chinese.

6.

Phylogenomics and molecular evolution of polyomaviruses.

Crandall KA, Pérez-Losada M, Christensen RG, McClellan DA, Viscidi RP.

Adv Exp Med Biol. 2006;577:46-59. Review.

PMID:
16626026
7.

Genomic biodiversity, phylogenetics and coevolution in proteins.

Pollock DD.

Appl Bioinformatics. 2002;1(2):81-92. Review.

8.

Applications of genetic programming in cancer research.

Worzel WP, Yu J, Almal AA, Chinnaiyan AM.

Int J Biochem Cell Biol. 2009 Feb;41(2):405-13. doi: 10.1016/j.biocel.2008.09.025. Review.

9.

Bringing molecules back into molecular evolution.

Wilke CO.

PLoS Comput Biol. 2012;8(6):e1002572. doi: 10.1371/journal.pcbi.1002572. Review.

10.

New methods for inferring population dynamics from microbial sequences.

Pérez-Losada M, Porter ML, Tazi L, Crandall KA.

Infect Genet Evol. 2007 Jan;7(1):24-43. Review.

11.

Informatics for molecular biologists.

Sadreyev RI.

Curr Protoc Mol Biol. 2014 Apr 14;106:19.0.1-2. doi: 10.1002/0471142727.mb1900s106. Review. No abstract available.

PMID:
24733239
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