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Items: 17

1.

Connecting genotype to phenotype in the era of high-throughput sequencing.

Henry CS, Overbeek R, Xia F, Best AA, Glass E, Gilbert J, Larsen P, Edwards R, Disz T, Meyer F, Vonstein V, Dejongh M, Bartels D, Desai N, D'Souza M, Devoid S, Keegan KP, Olson R, Wilke A, Wilkening J, Stevens RL.

Biochim Biophys Acta. 2011 Oct;1810(10):967-77. doi: 10.1016/j.bbagen.2011.03.010. Epub 2011 Mar 21. Review.

PMID:
21421023
2.

Single cell genome sequencing.

Yilmaz S, Singh AK.

Curr Opin Biotechnol. 2012 Jun;23(3):437-43. doi: 10.1016/j.copbio.2011.11.018. Epub 2011 Dec 7. Review.

3.

A primer on metagenomics.

Wooley JC, Godzik A, Friedberg I.

PLoS Comput Biol. 2010 Feb 26;6(2):e1000667. doi: 10.1371/journal.pcbi.1000667. Review.

4.

Functional metagenomics: recent advances and future challenges.

Chistoserdovai L.

Biotechnol Genet Eng Rev. 2010;26:335-52. Review.

PMID:
21415887
5.

From bacterial to microbial ecosystems (metagenomics).

Williamson SJ, Yooseph S.

Methods Mol Biol. 2012;804:35-55. doi: 10.1007/978-1-61779-361-5_3. Review.

PMID:
22144147
6.

Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis.

Scholz MB, Lo CC, Chain PS.

Curr Opin Biotechnol. 2012 Feb;23(1):9-15. doi: 10.1016/j.copbio.2011.11.013. Epub 2011 Dec 9. Review.

PMID:
22154470
7.

Targeted metagenomics: a high-resolution metagenomics approach for specific gene clusters in complex microbial communities.

Suenaga H.

Environ Microbiol. 2012 Jan;14(1):13-22. doi: 10.1111/j.1462-2920.2011.02438.x. Epub 2011 Mar 1. Review.

PMID:
21366818
8.

Pathogen comparative genomics in the next-generation sequencing era: genome alignments, pangenomics and metagenomics.

Hu B, Xie G, Lo CC, Starkenburg SR, Chain PS.

Brief Funct Genomics. 2011 Nov;10(6):322-33. doi: 10.1093/bfgp/elr042. Review.

PMID:
22199376
9.

Bioinformatic approaches for functional annotation and pathway inference in metagenomics data.

De Filippo C, Ramazzotti M, Fontana P, Cavalieri D.

Brief Bioinform. 2012 Nov;13(6):696-710. doi: 10.1093/bib/bbs070. Review.

10.

Massive parallel sequencing in animal genetics: wherefroms and wheretos.

PĂ©rez-Enciso M, Ferretti L.

Anim Genet. 2010 Dec;41(6):561-9. doi: 10.1111/j.1365-2052.2010.02057.x. Review.

PMID:
20477787
11.

Classification of metagenomic sequences: methods and challenges.

Mande SS, Mohammed MH, Ghosh TS.

Brief Bioinform. 2012 Nov;13(6):669-81. doi: 10.1093/bib/bbs054. Epub 2012 Sep 8. Review.

PMID:
22962338
12.

Metagenomic Assembly: Overview, Challenges and Applications.

Ghurye JS, Cepeda-Espinoza V, Pop M.

Yale J Biol Med. 2016 Sep 30;89(3):353-362. eCollection 2016 Sep. Review.

13.

Next-generation sequencing technologies: breaking the sound barrier of human genetics.

Bahassi el M, Stambrook PJ.

Mutagenesis. 2014 Sep;29(5):303-10. doi: 10.1093/mutage/geu031. Review.

PMID:
25150023
14.

Functional assignment of metagenomic data: challenges and applications.

Prakash T, Taylor TD.

Brief Bioinform. 2012 Nov;13(6):711-27. doi: 10.1093/bib/bbs033. Epub 2012 Jul 6. Review.

15.

From sequence to function: Insights from natural variation in budding yeasts.

Nieduszynski CA, Liti G.

Biochim Biophys Acta. 2011 Oct;1810(10):959-66. doi: 10.1016/j.bbagen.2011.02.004. Epub 2011 Feb 12. Review.

16.

Unpredictability of metabolism--the key role of metabolomics science in combination with next-generation genome sequencing.

Weckwerth W.

Anal Bioanal Chem. 2011 Jun;400(7):1967-78. doi: 10.1007/s00216-011-4948-9. Epub 2011 May 10. Review.

17.

Reporting phenotypes in mouse models when considering body size as a potential confounder.

Oellrich A, Meehan TF, Parkinson H, Sarntivijai S, White JK, Karp NA.

J Biomed Semantics. 2016 Feb 9;7:2. doi: 10.1186/s13326-016-0050-8. eCollection 2016. Review.

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