Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 11

1.

An integrated pipeline for the genome-wide analysis of transcription factor binding sites from ChIP-Seq.

Mercier E, Droit A, Li L, Robertson G, Zhang X, Gottardo R.

PLoS One. 2011 Feb 16;6(2):e16432. doi: 10.1371/journal.pone.0016432.

2.

Role of ChIP-seq in the discovery of transcription factor binding sites, differential gene regulation mechanism, epigenetic marks and beyond.

Mundade R, Ozer HG, Wei H, Prabhu L, Lu T.

Cell Cycle. 2014;13(18):2847-52. doi: 10.4161/15384101.2014.949201. Review.

3.

Computation for ChIP-seq and RNA-seq studies.

Pepke S, Wold B, Mortazavi A.

Nat Methods. 2009 Nov;6(11 Suppl):S22-32. doi: 10.1038/nmeth.1371. Review.

4.

A short survey of computational analysis methods in analysing ChIP-seq data.

Kim H, Kim J, Selby H, Gao D, Tong T, Phang TL, Tan AC.

Hum Genomics. 2011 Jan;5(2):117-23. Review.

5.

Transcription Factor Binding Site Mapping Using ChIP-Seq.

Jaini S, Lyubetskaya A, Gomes A, Peterson M, Park ST, Raman S, Schoolnik G, Galagan J.

Microbiol Spectr. 2014 Apr;2(2). doi: 10.1128/microbiolspec.MGM2-0035-2013. Review.

PMID:
26105820
6.

Genome-wide identification of DNA-protein interactions using chromatin immunoprecipitation coupled with flow cell sequencing.

Hoffman BG, Jones SJ.

J Endocrinol. 2009 Apr;201(1):1-13. doi: 10.1677/JOE-08-0526. Epub 2009 Jan 9. Review.

7.

Mapping Transcription Regulatory Networks with ChIP-seq and RNA-seq.

Wade JT.

Adv Exp Med Biol. 2015;883:119-34. doi: 10.1007/978-3-319-23603-2_7. Review.

PMID:
26621465
8.

[Finding targets of transcriptional regulators--chromatin immunoprecipitation assay (ChIP)].

Kus-Liśkiewicz M, Widłak W.

Postepy Biochem. 2011;57(4):418-24. Review. Polish.

PMID:
22568174
9.

Every transcription factor deserves its map: Scaling up epitope tagging of proteins to bypass antibody problems.

Partridge EC, Watkins TA, Mendenhall EM.

Bioessays. 2016 Aug;38(8):801-11. doi: 10.1002/bies.201600028. Epub 2016 Jun 17. Review.

PMID:
27311628
10.

Genomic location analysis by ChIP-Seq.

Barski A, Zhao K.

J Cell Biochem. 2009 May 1;107(1):11-8. doi: 10.1002/jcb.22077. Review.

11.

A review of ensemble methods for de novo motif discovery in ChIP-Seq data.

Lihu A, Holban Ş.

Brief Bioinform. 2015 Nov;16(6):964-73. doi: 10.1093/bib/bbv022. Epub 2015 Apr 17. Review. Erratum in: Brief Bioinform. 2016 Jul;17(4):731.

PMID:
25888697

Supplemental Content

Support Center