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Items: 9

1.

Non-coding RNA detection methods combined to improve usability, reproducibility and precision.

Raasch P, Schmitz U, Patenge N, Vera J, Kreikemeyer B, Wolkenhauer O.

BMC Bioinformatics. 2010 Sep 29;11:491. doi: 10.1186/1471-2105-11-491.

2.

Computational RNomics: structure identification and functional prediction of non-coding RNAs in silico.

Zheng L, Qu L.

Sci China Life Sci. 2010 May;53(5):548-62. doi: 10.1007/s11427-010-0101-9. Epub 2010 May 23. Review.

PMID:
20596938
3.

Class-specific prediction of ncRNAs.

Stadler PF.

Methods Mol Biol. 2014;1097:199-213. doi: 10.1007/978-1-62703-709-9_10. Review.

PMID:
24639161
4.

Sequence and structure analysis of noncoding RNAs.

Washietl S.

Methods Mol Biol. 2010;609:285-306. doi: 10.1007/978-1-60327-241-4_17. Review.

PMID:
20221926
5.

Non-coding transcription characterization and annotation: a guide and web resource for non-coding RNA databases.

Paschoal AR, Maracaja-Coutinho V, Setubal JC, Simões ZL, Verjovski-Almeida S, Durham AM.

RNA Biol. 2012 Mar;9(3):274-82. doi: 10.4161/rna.19352. Epub 2012 Mar 1. Review.

PMID:
22336709
6.

Identification and annotation of noncoding RNAs in Saccharomycotina.

Cruz JA, Westhof E.

C R Biol. 2011 Aug-Sep;334(8-9):671-8. doi: 10.1016/j.crvi.2011.05.016. Epub 2011 Jul 6. Review.

PMID:
21819949
7.

De novo discovery of structured ncRNA motifs in genomic sequences.

Ruzzo WL, Gorodkin J.

Methods Mol Biol. 2014;1097:303-18. doi: 10.1007/978-1-62703-709-9_15. Review.

PMID:
24639166
8.

Noncoding RNA: Current Deep Sequencing Data Analysis Approaches and Challenges.

Veneziano D, Di Bella S, Nigita G, Laganà A, Ferro A, Croce CM.

Hum Mutat. 2016 Dec;37(12):1283-1298. doi: 10.1002/humu.23066. Epub 2016 Sep 5. Review.

PMID:
27516218
9.

A Review of Computational Methods for Finding Non-Coding RNA Genes.

Abbas Q, Raza SM, Biyabani AA, Jaffar MA.

Genes (Basel). 2016 Dec 3;7(12). pii: E113. Review.

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