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Items: 1 to 20 of 26

1.

Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.

Harris RA, Wang T, Coarfa C, Nagarajan RP, Hong C, Downey SL, Johnson BE, Fouse SD, Delaney A, Zhao Y, Olshen A, Ballinger T, Zhou X, Forsberg KJ, Gu J, Echipare L, O'Geen H, Lister R, Pelizzola M, Xi Y, Epstein CB, Bernstein BE, Hawkins RD, Ren B, Chung WY, Gu H, Bock C, Gnirke A, Zhang MQ, Haussler D, Ecker JR, Li W, Farnham PJ, Waterland RA, Meissner A, Marra MA, Hirst M, Milosavljevic A, Costello JF.

Nat Biotechnol. 2010 Oct;28(10):1097-105. doi: 10.1038/nbt.1682. Epub 2010 Sep 19.

2.

Analyzing the cancer methylome through targeted bisulfite sequencing.

Lee EJ, Luo J, Wilson JM, Shi H.

Cancer Lett. 2013 Nov 1;340(2):171-8. doi: 10.1016/j.canlet.2012.10.040. Epub 2012 Nov 28. Review.

3.

Genome-scale DNA methylation analysis.

Fouse SD, Nagarajan RO, Costello JF.

Epigenomics. 2010 Feb;2(1):105-17. doi: 10.2217/epi.09.35. Review.

4.

Methodological aspects of whole-genome bisulfite sequencing analysis.

Adusumalli S, Mohd Omar MF, Soong R, Benoukraf T.

Brief Bioinform. 2015 May;16(3):369-79. doi: 10.1093/bib/bbu016. Epub 2014 May 27. Review.

PMID:
24867940
5.

[The application of next generation sequencing on epigenetic study].

Shen S, Qu Y, Zhang J.

Yi Chuan. 2014 Mar;36(3):256-75. Review. Chinese.

PMID:
24846966
6.

Analysis of gene-specific and genome-wide sperm DNA methylation.

Hammoud SS, Cairns BR, Carrell DT.

Methods Mol Biol. 2013;927:451-8. Review.

PMID:
22992936
7.

Genome-wide DNA methylation profiling.

Bibikova M, Fan JB.

Wiley Interdiscip Rev Syst Biol Med. 2010 Mar-Apr;2(2):210-23. doi: 10.1002/wsbm.35. Review.

PMID:
20836023
8.

Monitoring methylation changes in cancer.

Beier V, Mund C, Hoheisel JD.

Adv Biochem Eng Biotechnol. 2007;104:1-11. Review.

PMID:
17290816
9.

Base resolution methylome profiling: considerations in platform selection, data preprocessing and analysis.

Sun Z, Cunningham J, Slager S, Kocher JP.

Epigenomics. 2015 Aug;7(5):813-28. doi: 10.2217/epi.15.21. Epub 2015 Sep 14. Review.

10.

Studying the epigenome using next generation sequencing.

Ku CS, Naidoo N, Wu M, Soong R.

J Med Genet. 2011 Nov;48(11):721-30. doi: 10.1136/jmedgenet-2011-100242. Epub 2011 Aug 8. Review.

PMID:
21825079
11.

Bisulfite methylation profiling of large genomes.

Reinders J, Paszkowski J.

Epigenomics. 2010 Apr;2(2):209-20. doi: 10.2217/epi.10.6. Review.

PMID:
22121871
12.

Global DNA methylation profiling technologies and the ovarian cancer methylome.

Tang J, Fang F, Miller DF, Pilrose JM, Matei D, Huang TH, Nephew KP.

Methods Mol Biol. 2015;1238:653-75. doi: 10.1007/978-1-4939-1804-1_34. Review.

PMID:
25421685
13.

Single-base resolution analysis of DNA epigenome via high-throughput sequencing.

Peng J, Xia B, Yi C.

Sci China Life Sci. 2016 Mar;59(3):219-26. doi: 10.1007/s11427-016-5013-x. Epub 2016 Jan 29. Review.

PMID:
26825949
14.

Principles and challenges of genomewide DNA methylation analysis.

Laird PW.

Nat Rev Genet. 2010 Mar;11(3):191-203. doi: 10.1038/nrg2732. Review.

PMID:
20125086
15.

Methods in DNA methylation profiling.

Zuo T, Tycko B, Liu TM, Lin JJ, Huang TH.

Epigenomics. 2009 Dec;1(2):331-45. doi: 10.2217/epi.09.31. Review.

16.

Genome-wide epigenomic profiling for biomarker discovery.

Dirks RA, Stunnenberg HG, Marks H.

Clin Epigenetics. 2016 Nov 21;8:122. eCollection 2016. Review.

17.

SMAP: a streamlined methylation analysis pipeline for bisulfite sequencing.

Gao S, Zou D, Mao L, Zhou Q, Jia W, Huang Y, Zhao S, Chen G, Wu S, Li D, Xia F, Chen H, Chen M, Ørntoft TF, Bolund L, Sørensen KD.

Gigascience. 2015 Jul 1;4:29. doi: 10.1186/s13742-015-0070-9. eCollection 2015. Review.

18.

DNA methylome analysis using short bisulfite sequencing data.

Krueger F, Kreck B, Franke A, Andrews SR.

Nat Methods. 2012 Jan 30;9(2):145-51. doi: 10.1038/nmeth.1828. Review.

PMID:
22290186
19.

Profiling genome-wide DNA methylation.

Yong WS, Hsu FM, Chen PY.

Epigenetics Chromatin. 2016 Jun 29;9:26. doi: 10.1186/s13072-016-0075-3. eCollection 2016. Review.

20.

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