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Items: 15

1.

Epidemiological study of phylogenetic transmission clusters in a local HIV-1 epidemic reveals distinct differences between subtype B and non-B infections.

Chalmet K, Staelens D, Blot S, Dinakis S, Pelgrom J, Plum J, Vogelaers D, Vandekerckhove L, Verhofstede C.

BMC Infect Dis. 2010 Sep 7;10:262. doi: 10.1186/1471-2334-10-262.

2.

Molecular epidemiology of HIV-1 infection in Europe: An overview.

Beloukas A, Psarris A, Giannelou P, Kostaki E, Hatzakis A, Paraskevis D.

Infect Genet Evol. 2016 Dec;46:180-189. doi: 10.1016/j.meegid.2016.06.033. Epub 2016 Jun 16. Review.

PMID:
27321440
3.

HIV molecular epidemiology: transmission and adaptation to human populations.

Woodman Z, Williamson C.

Curr Opin HIV AIDS. 2009 Jul;4(4):247-52. doi: 10.1097/COH.0b013e32832c0672. Review.

4.

HIV-1 circulating subtypes in Romania.

Manolescu LS, Temereanca A, Ruţă S.

Roum Arch Microbiol Immunol. 2013 Apr-Jun;72(2):121-34. Review. English, Romanian.

PMID:
24187810
5.

Defining HIV-1 transmission clusters based on sequence data.

Hassan AS, Pybus OG, Sanders EJ, Albert J, Esbjörnsson J.

AIDS. 2017 Jun 1;31(9):1211-1222. doi: 10.1097/QAD.0000000000001470. Review.

6.

Non-M variants of human immunodeficiency virus type 1.

Mourez T, Simon F, Plantier JC.

Clin Microbiol Rev. 2013 Jul;26(3):448-61. doi: 10.1128/CMR.00012-13. Review.

7.

Molecular tools for studying HIV transmission in sexual networks.

Grabowski MK, Redd AD.

Curr Opin HIV AIDS. 2014 Mar;9(2):126-33. doi: 10.1097/COH.0000000000000040. Review.

8.

HIV-1 subtype B: Traces of a pandemic.

Junqueira DM, Almeida SE.

Virology. 2016 Aug;495:173-84. doi: 10.1016/j.virol.2016.05.003. Epub 2016 May 23. Review.

9.

Genetic and antigenic features of the transmitted virus.

Keele BF, Derdeyn CA.

Curr Opin HIV AIDS. 2009 Sep;4(5):352-7. doi: 10.1097/COH.0b013e32832d9fef. Review.

PMID:
20048697
10.

Phylogenetic studies of transmission dynamics in generalized HIV epidemics: an essential tool where the burden is greatest?

Dennis AM, Herbeck JT, Brown AL, Kellam P, de Oliveira T, Pillay D, Fraser C, Cohen MS.

J Acquir Immune Defic Syndr. 2014 Oct 1;67(2):181-95. doi: 10.1097/QAI.0000000000000271. Review.

11.

Recent evolutionary history of human immunodeficiency virus type 1 subtype B--response.

Smith UR, Kuiken C, Korber BT.

J Mol Evol. 2003 May;56(5):643-4; author reply 645-7. Review.

PMID:
12718318
12.

The application of HIV molecular epidemiology to public health.

Paraskevis D, Nikolopoulos GK, Magiorkinis G, Hodges-Mameletzis I, Hatzakis A.

Infect Genet Evol. 2016 Dec;46:159-168. doi: 10.1016/j.meegid.2016.06.021. Epub 2016 Jun 14. Review.

PMID:
27312102
13.

Genetic Cluster Analysis for HIV Prevention.

Grabowski MK, Herbeck JT, Poon AFY.

Curr HIV/AIDS Rep. 2018 Apr;15(2):182-189. doi: 10.1007/s11904-018-0384-1. Review.

14.

Clinical applications of pathogen phylogenies.

Hartfield M, Murall CL, Alizon S.

Trends Mol Med. 2014 Jul;20(7):394-404. doi: 10.1016/j.molmed.2014.04.002. Epub 2014 May 1. Review.

PMID:
24794010
15.

Genotypic and Phylogenetic Insights on Prevention of the Spread of HIV-1 and Drug Resistance in "Real-World" Settings.

Brenner BG, Ibanescu RI, Hardy I, Roger M.

Viruses. 2017 Dec 28;10(1). pii: E10. doi: 10.3390/v10010010. Review.

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