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Items: 10

1.

ProbKnot: fast prediction of RNA secondary structure including pseudoknots.

Bellaousov S, Mathews DH.

RNA. 2010 Oct;16(10):1870-80. doi: 10.1261/rna.2125310. Epub 2010 Aug 10.

2.

Bridging the gap in RNA structure prediction.

Shapiro BA, Yingling YG, Kasprzak W, Bindewald E.

Curr Opin Struct Biol. 2007 Apr;17(2):157-65. Epub 2007 Mar 23. Review.

PMID:
17383172
3.

Prediction of RNA secondary structure by free energy minimization.

Mathews DH, Turner DH.

Curr Opin Struct Biol. 2006 Jun;16(3):270-8. Epub 2006 May 19. Review.

PMID:
16713706
4.

Prediction and design of DNA and RNA structures.

Andersen ES.

N Biotechnol. 2010 Jul 31;27(3):184-93. doi: 10.1016/j.nbt.2010.02.012. Epub 2010 Mar 1. Review.

PMID:
20193785
5.

RNA structure prediction: an overview of methods.

Seetin MG, Mathews DH.

Methods Mol Biol. 2012;905:99-122. doi: 10.1007/978-1-61779-949-5_8. Review.

PMID:
22736001
6.

Comparative sequence analysis of tmRNA.

Zwieb C, Wower I, Wower J.

Nucleic Acids Res. 1999 May 15;27(10):2063-71. Review.

7.

SHAPE-directed RNA secondary structure prediction.

Low JT, Weeks KM.

Methods. 2010 Oct;52(2):150-8. doi: 10.1016/j.ymeth.2010.06.007. Epub 2010 Jun 8. Review.

8.

RNA pseudoknots and the regulation of protein synthesis.

Brierley I, Gilbert RJ, Pennell S.

Biochem Soc Trans. 2008 Aug;36(Pt 4):684-9. doi: 10.1042/BST0360684. Review.

PMID:
18631140
9.

Computational approaches to RNA structure prediction, analysis, and design.

Laing C, Schlick T.

Curr Opin Struct Biol. 2011 Jun;21(3):306-18. doi: 10.1016/j.sbi.2011.03.015. Epub 2011 Apr 21. Review.

10.

Advances in RNA structure analysis by chemical probing.

Weeks KM.

Curr Opin Struct Biol. 2010 Jun;20(3):295-304. doi: 10.1016/j.sbi.2010.04.001. Epub 2010 May 4. Review.

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