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Items: 1 to 20 of 40

1.

Computational methods for discovering structural variation with next-generation sequencing.

Medvedev P, Stanciu M, Brudno M.

Nat Methods. 2009 Nov;6(11 Suppl):S13-20. doi: 10.1038/nmeth.1374. Review.

PMID:
19844226
2.

Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing.

Horner DS, Pavesi G, Castrignanò T, De Meo PD, Liuni S, Sammeth M, Picardi E, Pesole G.

Brief Bioinform. 2010 Mar;11(2):181-97. doi: 10.1093/bib/bbp046. Review.

PMID:
19864250
3.

Advances in understanding cancer genomes through second-generation sequencing.

Meyerson M, Gabriel S, Getz G.

Nat Rev Genet. 2010 Oct;11(10):685-96. doi: 10.1038/nrg2841. Review.

PMID:
20847746
4.

Single-molecule DNA sequencing technologies for future genomics research.

Gupta PK.

Trends Biotechnol. 2008 Nov;26(11):602-11. doi: 10.1016/j.tibtech.2008.07.003. Review.

PMID:
18722683
5.
6.

CGAT: a model for immersive personalized training in computational genomics.

Sims D, Ponting CP, Heger A.

Brief Funct Genomics. 2016 Jan;15(1):32-7. doi: 10.1093/bfgp/elv021. Review.

7.

Current state-of-art of sequencing technologies for plant genomics research.

Thudi M, Li Y, Jackson SA, May GD, Varshney RK.

Brief Funct Genomics. 2012 Jan;11(1):3-11. doi: 10.1093/bfgp/elr045. Review.

PMID:
22345601
8.

Reconstructing the history of large-scale genomic changes: biological questions and computational challenges.

Ma J.

J Comput Biol. 2011 Jul;18(7):879-93. doi: 10.1089/cmb.2010.0189. Review.

PMID:
21563973
9.

Characterizing natural variation using next-generation sequencing technologies.

Gilad Y, Pritchard JK, Thornton K.

Trends Genet. 2009 Oct;25(10):463-71. doi: 10.1016/j.tig.2009.09.003. Review.

10.

An introduction to the informatics of "next-generation" sequencing.

Stein LD.

Curr Protoc Bioinformatics. 2011 Dec;Chapter 11:Unit 11.1.. doi: 10.1002/0471250953.bi1101s36. Review.

PMID:
22161566
11.

Detection of structural DNA variation from next generation sequencing data: a review of informatic approaches.

Abel HJ, Duncavage EJ.

Cancer Genet. 2013 Dec;206(12):432-40. doi: 10.1016/j.cancergen.2013.11.002. Review.

12.

The Genome Sequencer FLX System--longer reads, more applications, straight forward bioinformatics and more complete data sets.

Droege M, Hill B.

J Biotechnol. 2008 Aug 31;136(1-2):3-10. doi: 10.1016/j.jbiotec.2008.03.021. Review.

PMID:
18616967
13.

Sequence assembly using next generation sequencing data--challenges and solutions.

Chin FY, Leung HC, Yiu SM.

Sci China Life Sci. 2014 Nov;57(11):1140-8. doi: 10.1007/s11427-014-4752-9. Review.

PMID:
25326069
14.

Genome sequence data: management, storage, and visualization.

Batley J, Edwards D.

Biotechniques. 2009 Apr;46(5):333-4, 336. doi: 10.2144/000113134. Review.

15.

Applications of next-generation sequencing technologies in functional genomics.

Morozova O, Marra MA.

Genomics. 2008 Nov;92(5):255-64. doi: 10.1016/j.ygeno.2008.07.001. Review.

16.

New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing.

Song K, Ren J, Reinert G, Deng M, Waterman MS, Sun F.

Brief Bioinform. 2014 May;15(3):343-53. doi: 10.1093/bib/bbt067. Review.

17.

Comparative analysis of algorithms for whole-genome assembly of pyrosequencing data.

Finotello F, Lavezzo E, Fontana P, Peruzzo D, Albiero A, Barzon L, Falda M, Di Camillo B, Toppo S.

Brief Bioinform. 2012 May;13(3):269-80. doi: 10.1093/bib/bbr063. Review.

PMID:
22021898
18.

The impact of next-generation sequencing on genomics.

Zhang J, Chiodini R, Badr A, Zhang G.

J Genet Genomics. 2011 Mar 20;38(3):95-109. doi: 10.1016/j.jgg.2011.02.003. Review.

19.

Genomics of AML: clinical applications of next-generation sequencing.

Welch JS, Link DC.

Hematology Am Soc Hematol Educ Program. 2011;2011:30-5. doi: 10.1182/asheducation-2011.1.30. Review.

PMID:
22160009
20.
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