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Items: 7

1.

Effects of protein conformation in docking: improved pose prediction through protein pocket adaptation.

Jain AN.

J Comput Aided Mol Des. 2009 Jun;23(6):355-74. doi: 10.1007/s10822-009-9266-3. Epub 2009 Apr 2.

2.

Flexible ligand docking to multiple receptor conformations: a practical alternative.

Totrov M, Abagyan R.

Curr Opin Struct Biol. 2008 Apr;18(2):178-84. doi: 10.1016/j.sbi.2008.01.004. Epub 2008 Feb 25. Review.

3.

Comparing protein-ligand docking programs is difficult.

Cole JC, Murray CW, Nissink JW, Taylor RD, Taylor R.

Proteins. 2005 Aug 15;60(3):325-32. Review.

PMID:
15937897
4.

Accommodating protein flexibility for structure-based drug design.

Lin JH.

Curr Top Med Chem. 2011;11(2):171-8. Review.

PMID:
20939792
5.

Accounting for global protein deformability during protein-protein and protein-ligand docking.

May A, Zacharias M.

Biochim Biophys Acta. 2005 Dec 30;1754(1-2):225-31. Epub 2005 Sep 12. Review.

PMID:
16214429
6.

Protein flexibility in docking and surface mapping.

Lexa KW, Carlson HA.

Q Rev Biophys. 2012 Aug;45(3):301-43. doi: 10.1017/S0033583512000066. Epub 2012 May 9. Review.

7.

Flexible ligand-flexible protein docking in protein kinase systems.

Wong CF.

Biochim Biophys Acta. 2008 Jan;1784(1):244-51. Epub 2007 Oct 13. Review.

PMID:
17996742

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