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Items: 4

1.

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data.

Valouev A, Johnson DS, Sundquist A, Medina C, Anton E, Batzoglou S, Myers RM, Sidow A.

Nat Methods. 2008 Sep;5(9):829-34. doi: 10.1038/nmeth.1246.

2.

Visualizing and characterizing in vivo DNA-binding events and direct target genes of plant transcription factors.

MuiƱo JM, Angenent GC, Kaufmann K.

Methods Mol Biol. 2011;754:293-305. doi: 10.1007/978-1-61779-154-3_17. Review.

PMID:
21720960
3.

DNA sequence motif: a jack of all trades for ChIP-Seq data.

Kulakovskiy IV, Makeev VJ.

Adv Protein Chem Struct Biol. 2013;91:135-71. doi: 10.1016/B978-0-12-411637-5.00005-6. Review.

PMID:
23790213
4.

Genome-wide identification of DNA-protein interactions using chromatin immunoprecipitation coupled with flow cell sequencing.

Hoffman BG, Jones SJ.

J Endocrinol. 2009 Apr;201(1):1-13. doi: 10.1677/JOE-08-0526. Epub 2009 Jan 9. Review.

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