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Items: 6

1.

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls.

Rozowsky J, Euskirchen G, Auerbach RK, Zhang ZD, Gibson T, Bjornson R, Carriero N, Snyder M, Gerstein MB.

Nat Biotechnol. 2009 Jan;27(1):66-75. doi: 10.1038/nbt.1518.

2.

A short survey of computational analysis methods in analysing ChIP-seq data.

Kim H, Kim J, Selby H, Gao D, Tong T, Phang TL, Tan AC.

Hum Genomics. 2011 Jan;5(2):117-23. Review.

3.

Role of ChIP-seq in the discovery of transcription factor binding sites, differential gene regulation mechanism, epigenetic marks and beyond.

Mundade R, Ozer HG, Wei H, Prabhu L, Lu T.

Cell Cycle. 2014;13(18):2847-52. doi: 10.4161/15384101.2014.949201. Review.

4.

ChIP-seq: advantages and challenges of a maturing technology.

Park PJ.

Nat Rev Genet. 2009 Oct;10(10):669-80. doi: 10.1038/nrg2641. Review.

5.

Chop it, ChIP it, check it: the current status of chromatin immunoprecipitation.

Collas P, Dahl JA.

Front Biosci. 2008 Jan 1;13:929-43. Review.

PMID:
17981601
6.

Sequencing depth and coverage: key considerations in genomic analyses.

Sims D, Sudbery I, Ilott NE, Heger A, Ponting CP.

Nat Rev Genet. 2014 Feb;15(2):121-32. doi: 10.1038/nrg3642. Review.

PMID:
24434847
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