Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 19

1.

BioGraphE: high-performance bionetwork analysis using the Biological Graph Environment.

Chin G Jr, Chavarria DG, Nakamura GC, Sofia HJ.

BMC Bioinformatics. 2008 May 28;9 Suppl 6:S6. doi: 10.1186/1471-2105-9-S6-S6.

2.

Graphs in molecular biology.

Huber W, Carey VJ, Long L, Falcon S, Gentleman R.

BMC Bioinformatics. 2007 Sep 27;8 Suppl 6:S8. Review.

3.

Graph theoretic modeling of large-scale semantic networks.

Bales ME, Johnson SB.

J Biomed Inform. 2006 Aug;39(4):451-64. Epub 2005 Dec 15. Review.

4.

Tools for visually exploring biological networks.

Suderman M, Hallett M.

Bioinformatics. 2007 Oct 15;23(20):2651-9. Epub 2007 Aug 25. Review.

PMID:
17720984
5.

Network integration and graph analysis in mammalian molecular systems biology.

Ma'ayan A.

IET Syst Biol. 2008 Sep;2(5):206-21. doi: 10.1049/iet-syb:20070075. Review.

6.

Graph theory and networks in Biology.

Mason O, Verwoerd M.

IET Syst Biol. 2007 Mar;1(2):89-119. Review.

PMID:
17441552
7.

GPU computing for systems biology.

Dematté L, Prandi D.

Brief Bioinform. 2010 May;11(3):323-33. doi: 10.1093/bib/bbq006. Epub 2010 Mar 7. Review.

PMID:
20211843
8.

Graphics processing units in bioinformatics, computational biology and systems biology.

Nobile MS, Cazzaniga P, Tangherloni A, Besozzi D.

Brief Bioinform. 2017 Sep 1;18(5):870-885. doi: 10.1093/bib/bbw058. Review.

PMID:
27402792
9.

Systems-level insights into cellular regulation: inferring, analysing, and modelling intracellular networks.

Christensen C, Thakar J, Albert R.

IET Syst Biol. 2007 Mar;1(2):61-77. Review.

PMID:
17441550
10.

Algorithmic and analytical methods in network biology.

Koyutürk M.

Wiley Interdiscip Rev Syst Biol Med. 2010 May-Jun;2(3):277-92. doi: 10.1002/wsbm.61. Review.

11.

A structured approach for the engineering of biochemical network models, illustrated for signalling pathways.

Breitling R, Gilbert D, Heiner M, Orton R.

Brief Bioinform. 2008 Sep;9(5):404-21. doi: 10.1093/bib/bbn026. Epub 2008 Jun 23. Review.

PMID:
18573813
12.

A critical examination of stoichiometric and path-finding approaches to metabolic pathways.

Planes FJ, Beasley JE.

Brief Bioinform. 2008 Sep;9(5):422-36. doi: 10.1093/bib/bbn018. Epub 2008 Apr 24. Review.

PMID:
18436574
13.

Computational tools for the modern andrologist.

Niederberger C.

J Androl. 1996 Sep-Oct;17(5):462-6. Review.

14.

Software for systems biology: from tools to integrated platforms.

Ghosh S, Matsuoka Y, Asai Y, Hsin KY, Kitano H.

Nat Rev Genet. 2011 Nov 3;12(12):821-32. doi: 10.1038/nrg3096. Review.

PMID:
22048662
15.

Review on Graph Clustering and Subgraph Similarity Based Analysis of Neurological Disorders.

Thomas J, Seo D, Sael L.

Int J Mol Sci. 2016 Jun 1;17(6). pii: E862. doi: 10.3390/ijms17060862. Review.

16.

Computing Platforms for Big Biological Data Analytics: Perspectives and Challenges.

Yin Z, Lan H, Tan G, Lu M, Vasilakos AV, Liu W.

Comput Struct Biotechnol J. 2017 Aug 14;15:403-411. doi: 10.1016/j.csbj.2017.07.004. eCollection 2017. Review.

17.

Representing and querying disease networks using graph databases.

Lysenko A, Roznovăţ IA, Saqi M, Mazein A, Rawlings CJ, Auffray C.

BioData Min. 2016 Jul 25;9:23. doi: 10.1186/s13040-016-0102-8. eCollection 2016. Review.

18.

Modern Computational Techniques for the HMMER Sequence Analysis.

Meng X, Ji Y.

ISRN Bioinform. 2013 Sep 3;2013:252183. doi: 10.1155/2013/252183. eCollection 2013. Review.

19.

Comparison and enumeration of chemical graphs.

Akutsu T, Nagamochi H.

Comput Struct Biotechnol J. 2013 Feb 26;5:e201302004. doi: 10.5936/csbj.201302004. eCollection 2013. Review.

Supplemental Content

Support Center