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Links from PubMed

Items: 14

1.

Dissecting complex transcriptional responses using pathway-level scores based on prior information.

Bussemaker HJ, Ward LD, Boorsma A.

BMC Bioinformatics. 2007 Sep 27;8 Suppl 6:S6. Review.

2.

From biophysics to evolutionary genetics: statistical aspects of gene regulation.

Lässig M.

BMC Bioinformatics. 2007 Sep 27;8 Suppl 6:S7. Review.

3.

Graphs in molecular biology.

Huber W, Carey VJ, Long L, Falcon S, Gentleman R.

BMC Bioinformatics. 2007 Sep 27;8 Suppl 6:S8. Review.

4.

Molecular networks in microarray analysis.

Sivachenko AY, Yuryev A, Daraselia N, Mazo I.

J Bioinform Comput Biol. 2007 Apr;5(2B):429-56. Review.

PMID:
17636854
5.

Pathways to the analysis of microarray data.

Curtis RK, Oresic M, Vidal-Puig A.

Trends Biotechnol. 2005 Aug;23(8):429-35. Review.

PMID:
15950303
6.

From pathways databases to network models of switching behavior.

Aguda BD, Goryachev AB.

PLoS Comput Biol. 2007 Sep;3(9):1674-8. Review. No abstract available.

7.

Inference of gene regulatory networks using boolean-network inference methods.

Hickman GJ, Hodgman TC.

J Bioinform Comput Biol. 2009 Dec;7(6):1013-29. Review.

PMID:
20014476
8.

Towards knowledge-based gene expression data mining.

Bellazzi R, Zupan B.

J Biomed Inform. 2007 Dec;40(6):787-802. Epub 2007 Jun 21. Review.

9.

Reconstructing signal transduction pathways: challenges and opportunities.

Levine AJ, Hu W, Feng Z, Gil G.

Ann N Y Acad Sci. 2007 Dec;1115:32-50. Epub 2007 Oct 12. Review.

PMID:
17934060
10.

Reverse engineering of gene regulatory networks.

Cho KH, Choo SM, Jung SH, Kim JR, Choi HS, Kim J.

IET Syst Biol. 2007 May;1(3):149-63. Review.

PMID:
17591174
11.

Comparison of reverse-engineering methods using an in silico network.

Camacho D, Vera Licona P, Mendes P, Laubenbacher R.

Ann N Y Acad Sci. 2007 Dec;1115:73-89. Epub 2007 Oct 9. Review.

PMID:
17925358
12.

Predictive modeling of genome-wide mRNA expression: from modules to molecules.

Bussemaker HJ, Foat BC, Ward LD.

Annu Rev Biophys Biomol Struct. 2007;36:329-47. Review.

PMID:
17311525
13.

Databases, models, and algorithms for functional genomics: a bioinformatics perspective.

Singh GB, Singh H.

Mol Biotechnol. 2005 Feb;29(2):165-83. Review.

PMID:
15699571
14.

[Microarray-based transcriptome analyses in infectious diseases. A new diagnostic method].

Hossain H, Chakraborty T.

Internist (Berl). 2006 Jun;47 Suppl 1:S6, S8-13. Review. German.

PMID:
16773368

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