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Items: 12

1.

Orthology prediction at scalable resolution by phylogenetic tree analysis.

van der Heijden RT, Snel B, van Noort V, Huynen MA.

BMC Bioinformatics. 2007 Mar 8;8:83.

2.

Inferring orthology and paralogy.

Altenhoff AM, Dessimoz C.

Methods Mol Biol. 2012;855:259-79. doi: 10.1007/978-1-61779-582-4_9. Review.

PMID:
22407712
3.

The effect of gene duplication on homology.

Holland PW.

Novartis Found Symp. 1999;222:226-36; discussion 236-42. Review.

PMID:
10332763
4.

The quest for orthologs: finding the corresponding gene across genomes.

Kuzniar A, van Ham RC, Pongor S, Leunissen JA.

Trends Genet. 2008 Nov;24(11):539-51. doi: 10.1016/j.tig.2008.08.009. Epub 2008 Sep 24. Review.

PMID:
18819722
5.

Tree disagreement: measuring and testing incongruence in phylogenies.

Planet PJ.

J Biomed Inform. 2006 Feb;39(1):86-102. Epub 2005 Sep 28. Review.

6.

Positional orthology: putting genomic evolutionary relationships into context.

Dewey CN.

Brief Bioinform. 2011 Sep;12(5):401-12. doi: 10.1093/bib/bbr040. Epub 2011 Jun 24. Review.

7.

Large-scale assignment of orthology: back to phylogenetics?

Gabaldón T.

Genome Biol. 2008 Oct 30;9(10):235. doi: 10.1186/gb-2008-9-10-235. Review.

8.

Functional and evolutionary implications of gene orthology.

Gabaldón T, Koonin EV.

Nat Rev Genet. 2013 May;14(5):360-6. doi: 10.1038/nrg3456. Epub 2013 Apr 4. Review.

PMID:
23552219
9.

Incorporating tree-thinking and evolutionary time scale into developmental biology.

Kuraku S, Feiner N, Keeley SD, Hara Y.

Dev Growth Differ. 2016 Jan;58(1):131-42. doi: 10.1111/dgd.12258. Epub 2016 Jan 5. Review.

PMID:
26818824
10.

New Tools in Orthology Analysis: A Brief Review of Promising Perspectives.

Nichio BTL, Marchaukoski JN, Raittz RT.

Front Genet. 2017 Oct 31;8:165. doi: 10.3389/fgene.2017.00165. eCollection 2017. Review.

11.

Popmarker: Identifying Phylogenetic Markers at the Population Level.

Ke HM, Yu CP, Liu YC, Tsai IJ.

Evol Bioinform Online. 2017 Aug 16;13:1176934317724404. doi: 10.1177/1176934317724404. eCollection 2017. Review.

12.

What Is the Tree of Life?

Doolittle WF, Brunet TD.

PLoS Genet. 2016 Apr 14;12(4):e1005912. doi: 10.1371/journal.pgen.1005912. eCollection 2016 Apr. Review.

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