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Items: 12

1.

Inferring pairwise regulatory relationships from multiple time series datasets.

Shi Y, Mitchell T, Bar-Joseph Z.

Bioinformatics. 2007 Mar 15;23(6):755-63. Epub 2007 Jan 19.

PMID:
17237067
2.

Putting microarrays in a context: integrated analysis of diverse biological data.

Troyanskaya OG.

Brief Bioinform. 2005 Mar;6(1):34-43. Review.

PMID:
15826355
3.

Gene regulatory network inference: data integration in dynamic models-a review.

Hecker M, Lambeck S, Toepfer S, van Someren E, Guthke R.

Biosystems. 2009 Apr;96(1):86-103. doi: 10.1016/j.biosystems.2008.12.004. Epub 2008 Dec 27. Review.

PMID:
19150482
4.

Phylogenomic inference of protein molecular function: advances and challenges.

Sjölander K.

Bioinformatics. 2004 Jan 22;20(2):170-9. Review.

PMID:
14734307
5.

Analyzing time series gene expression data.

Bar-Joseph Z.

Bioinformatics. 2004 Nov 1;20(16):2493-503. Epub 2004 May 6. Review.

PMID:
15130923
6.

Impact of 'ome' analyses on inverse metabolic engineering.

Bro C, Nielsen J.

Metab Eng. 2004 Jul;6(3):204-11. Review.

PMID:
15256210
7.
8.

Inferring cellular networks--a review.

Markowetz F, Spang R.

BMC Bioinformatics. 2007 Sep 27;8 Suppl 6:S5. Review.

9.

Mapping phenotypic landscapes using DNA micro-arrays.

Lynch MD, Gill RT, Stephanopoulos G.

Metab Eng. 2004 Jul;6(3):177-85. Review.

PMID:
15256207
10.

Informatics approaches for identifying biologic relationships in time-series data.

McKinney BA.

Wiley Interdiscip Rev Nanomed Nanobiotechnol. 2009 Jan-Feb;1(1):60-8. doi: 10.1002/wnan.12. Review.

PMID:
20049779
11.

Dissecting complex transcriptional responses using pathway-level scores based on prior information.

Bussemaker HJ, Ward LD, Boorsma A.

BMC Bioinformatics. 2007 Sep 27;8 Suppl 6:S6. Review.

12.

Why Batch Effects Matter in Omics Data, and How to Avoid Them.

Goh WWB, Wang W, Wong L.

Trends Biotechnol. 2017 Jun;35(6):498-507. doi: 10.1016/j.tibtech.2017.02.012. Epub 2017 Mar 25. Review.

PMID:
28351613

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