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Links from PubMed

Items: 4

1.

Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST.

Gertz EM, Yu YK, Agarwala R, Schäffer AA, Altschul SF.

BMC Biol. 2006 Dec 7;4:41.

2.

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements.

Schäffer AA, Aravind L, Madden TL, Shavirin S, Spouge JL, Wolf YI, Koonin EV, Altschul SF.

Nucleic Acids Res. 2001 Jul 15;29(14):2994-3005. Review.

3.

Search Databases and Statistics: Pitfalls and Best Practices in Phosphoproteomics.

Refsgaard JC, Munk S, Jensen LJ.

Methods Mol Biol. 2016;1355:323-39. doi: 10.1007/978-1-4939-3049-4_22. Review.

PMID:
26584936
4.

Protein database searches using compositionally adjusted substitution matrices.

Altschul SF, Wootton JC, Gertz EM, Agarwala R, Morgulis A, Schäffer AA, Yu YK.

FEBS J. 2005 Oct;272(20):5101-9. Review.

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