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Items: 14

1.

Transcriptome network component analysis with limited microarray data.

Galbraith SJ, Tran LM, Liao JC.

Bioinformatics. 2006 Aug 1;22(15):1886-94. Epub 2006 Jun 9.

PMID:
16766556
2.

Molecular networks in microarray analysis.

Sivachenko AY, Yuryev A, Daraselia N, Mazo I.

J Bioinform Comput Biol. 2007 Apr;5(2B):429-56. Review.

PMID:
17636854
3.

An Overview of NCA-Based Algorithms for Transcriptional Regulatory Network Inference.

Wang X, Alshawaqfeh M, Dang X, Wajid B, Noor A, Qaraqe M, Serpedin E.

Microarrays (Basel). 2015 Nov 16;4(4):596-617. doi: 10.3390/microarrays4040596. Review.

4.

Inference of gene regulatory networks using boolean-network inference methods.

Hickman GJ, Hodgman TC.

J Bioinform Comput Biol. 2009 Dec;7(6):1013-29. Review.

PMID:
20014476
5.

From biophysics to evolutionary genetics: statistical aspects of gene regulation.

Lässig M.

BMC Bioinformatics. 2007 Sep 27;8 Suppl 6:S7. Review.

6.

Analyzing time series gene expression data.

Bar-Joseph Z.

Bioinformatics. 2004 Nov 1;20(16):2493-503. Epub 2004 May 6. Review.

PMID:
15130923
7.

Dissecting complex transcriptional responses using pathway-level scores based on prior information.

Bussemaker HJ, Ward LD, Boorsma A.

BMC Bioinformatics. 2007 Sep 27;8 Suppl 6:S6. Review.

8.

Genomic signal processing: from matrix algebra to genetic networks.

Alter O.

Methods Mol Biol. 2007;377:17-60. Review.

PMID:
17634608
9.

Learning transcriptional regulation on a genome scale: a theoretical analysis based on gene expression data.

Wu M, Chan C.

Brief Bioinform. 2012 Mar;13(2):150-61. doi: 10.1093/bib/bbr029. Epub 2011 May 26. Review.

10.

[Microarray-based transcriptome analyses in infectious diseases. A new diagnostic method].

Hossain H, Chakraborty T.

Internist (Berl). 2006 Jun;47 Suppl 1:S6, S8-13. Review. German.

PMID:
16773368
11.

Gene expression profiling for targeted cancer treatment.

Yuryev A.

Expert Opin Drug Discov. 2015 Jan;10(1):91-9. doi: 10.1517/17460441.2015.971007. Epub 2014 Oct 13. Review.

PMID:
25306865
12.

Reverse engineering models of cell cycle regulation.

Csikász-Nagy A, Novák B, Tyson JJ.

Adv Exp Med Biol. 2008;641:88-97. Review.

PMID:
18783174
13.

Network Metamodeling: Effect of Correlation Metric Choice on Phylogenomic and Transcriptomic Network Topology.

Weighill DA, Jacobson D.

Adv Biochem Eng Biotechnol. 2017;160:143-183. doi: 10.1007/10_2016_46. Review.

PMID:
28070594
14.

Transcriptome analysis in mitochondrial disorders.

Elstner M, Turnbull DM.

Brain Res Bull. 2012 Jul 1;88(4):285-93. doi: 10.1016/j.brainresbull.2011.07.018. Epub 2011 Aug 3. Review.

PMID:
21856382

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