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Items: 1 to 20 of 56

1.

From genomes to in silico cells via metabolic networks.

Borodina I, Nielsen J.

Curr Opin Biotechnol. 2005 Jun;16(3):350-5. Review.

PMID:
15961036
2.

Reconstruction of microbial transcriptional regulatory networks.

Herrgård MJ, Covert MW, Palsson BØ.

Curr Opin Biotechnol. 2004 Feb;15(1):70-7. Review.

PMID:
15102470
3.

Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments.

van Riel NA.

Brief Bioinform. 2006 Dec;7(4):364-74. Epub 2006 Nov 14. Review.

PMID:
17107967
4.

Reconstructing the metabolic network of a bacterium from its genome.

Francke C, Siezen RJ, Teusink B.

Trends Microbiol. 2005 Nov;13(11):550-8. Epub 2005 Sep 19. Review.

PMID:
16169729
5.

Use of genome-scale microbial models for metabolic engineering.

Patil KR, Akesson M, Nielsen J.

Curr Opin Biotechnol. 2004 Feb;15(1):64-9. Review.

PMID:
15102469
6.

Understanding human metabolic physiology: a genome-to-systems approach.

Mo ML, Palsson BØ.

Trends Biotechnol. 2009 Jan;27(1):37-44. doi: 10.1016/j.tibtech.2008.09.007. Epub 2008 Nov 17. Review.

PMID:
19010556
7.

Genome-scale metabolic networks.

Terzer M, Maynard ND, Covert MW, Stelling J.

Wiley Interdiscip Rev Syst Biol Med. 2009 Nov-Dec;1(3):285-97. doi: 10.1002/wsbm.37. Review.

PMID:
20835998
8.

Systems-level insights into cellular regulation: inferring, analysing, and modelling intracellular networks.

Christensen C, Thakar J, Albert R.

IET Syst Biol. 2007 Mar;1(2):61-77. Review.

PMID:
17441550
9.

Resources for integrative systems biology: from data through databases to networks and dynamic system models.

Ng A, Bursteinas B, Gao Q, Mollison E, Zvelebil M.

Brief Bioinform. 2006 Dec;7(4):318-30. Epub 2006 Oct 13. Review.

PMID:
17040977
10.

Constraints-based genome-scale metabolic simulation for systems metabolic engineering.

Park JM, Kim TY, Lee SY.

Biotechnol Adv. 2009 Nov-Dec;27(6):979-88. doi: 10.1016/j.biotechadv.2009.05.019. Epub 2009 May 20. Review.

PMID:
19464354
11.

Modeling and simulation: tools for metabolic engineering.

Wiechert W.

J Biotechnol. 2002 Mar 14;94(1):37-63. Review.

PMID:
11792451
12.

Gene regulatory network inference: data integration in dynamic models-a review.

Hecker M, Lambeck S, Toepfer S, van Someren E, Guthke R.

Biosystems. 2009 Apr;96(1):86-103. doi: 10.1016/j.biosystems.2008.12.004. Epub 2008 Dec 27. Review.

PMID:
19150482
13.

Essential genes on metabolic maps.

Gerdes S, Edwards R, Kubal M, Fonstein M, Stevens R, Osterman A.

Curr Opin Biotechnol. 2006 Oct;17(5):448-56. Epub 2006 Sep 15. Review.

PMID:
16978855
14.

Experimental and mathematical approaches to modeling plant metabolic networks.

Rios-Estepa R, Lange BM.

Phytochemistry. 2007 Aug-Sep;68(16-18):2351-74. Epub 2007 Jun 11. Review.

PMID:
17561179
15.

Genome-scale microbial in silico models: the constraints-based approach.

Price ND, Papin JA, Schilling CH, Palsson BO.

Trends Biotechnol. 2003 Apr;21(4):162-9. Review.

PMID:
12679064
16.

Modeling cancer: integration of "omics" information in dynamic systems.

Stransky B, Barrera J, Ohno-Machado L, De Souza SJ.

J Bioinform Comput Biol. 2007 Aug;5(4):977-86. Review.

PMID:
17787066
17.

Network-based functional modeling of genomics, transcriptomics and metabolism in bacteria.

Cloots L, Marchal K.

Curr Opin Microbiol. 2011 Oct;14(5):599-607. doi: 10.1016/j.mib.2011.09.003. Epub 2011 Sep 21. Review.

PMID:
21943683
18.

Proteomic and computational methods in systems modeling of cellular signaling.

Kleppe R, Kjarland E, Selheim F.

Curr Pharm Biotechnol. 2006 Jun;7(3):135-45. Review.

PMID:
16789899
19.

Use of randomized sampling for analysis of metabolic networks.

Schellenberger J, Palsson BØ.

J Biol Chem. 2009 Feb 27;284(9):5457-61. doi: 10.1074/jbc.R800048200. Epub 2008 Oct 20. Review.

20.

Metabolic network modeling and simulation for drug targeting and discovery.

Kim HU, Sohn SB, Lee SY.

Biotechnol J. 2012 Mar;7(3):330-42. doi: 10.1002/biot.201100159. Epub 2011 Nov 29. Review.

PMID:
22125297

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