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Items: 17

1.

A mathematical and computational framework for quantitative comparison and integration of large-scale gene expression data.

Hart CE, Sharenbroich L, Bornstein BJ, Trout D, King B, Mjolsness E, Wold BJ.

Nucleic Acids Res. 2005 May 10;33(8):2580-94. Print 2005.

2.

Computational approaches to analysis of DNA microarray data.

Quackenbush J.

Yearb Med Inform. 2006:91-103. Review.

PMID:
17051302
3.

Transcriptional regulatory networks and the yeast cell cycle.

Futcher B.

Curr Opin Cell Biol. 2002 Dec;14(6):676-83. Review.

PMID:
12473339
4.

Computational methods for transcriptional regulation.

Siggia ED.

Curr Opin Genet Dev. 2005 Apr;15(2):214-21. Review.

PMID:
15797205
5.

Large-scale gene expression data analysis: a new challenge to computational biologists.

Zhang MQ.

Genome Res. 1999 Aug;9(8):681-8. Review. Erratum in: Genome Res 1999 Nov;9(11):1156.

7.

Clustering algorithms in biomedical research: a review.

Xu R, Wunsch DC 2nd.

IEEE Rev Biomed Eng. 2010;3:120-54. doi: 10.1109/RBME.2010.2083647. Review.

PMID:
22275205
8.
9.

Cluster analysis and its applications to gene expression data.

Sharan R, Elkon R, Shamir R.

Ernst Schering Res Found Workshop. 2002;(38):83-108. Review. No abstract available.

PMID:
12061008
10.

Comparing the success of different prediction software in sequence analysis: a review.

Bajić VB.

Brief Bioinform. 2000 Sep;1(3):214-28. Review.

PMID:
11465033
11.

[Computational analysis of gene expression patterns].

Morishita S, Sese J.

Tanpakushitsu Kakusan Koso. 2001 Dec;46(16 Suppl):2575-9. Review. Japanese. No abstract available.

PMID:
11802432
12.

A review of integration strategies to support gene regulatory network construction.

Chen H, VanBuren V.

ScientificWorldJournal. 2012;2012:435257. doi: 10.1100/2012/435257. Epub 2012 Dec 27. Review.

13.

[Prediction of transcription and genomic sequences].

Martin D, Ghattas B, Thieffry D.

Med Sci (Paris). 2004 Nov;20(11):1036-40. Review. French.

14.

An integrated approach for inference and mechanistic modeling for advancing drug development.

Aksenov SV, Church B, Dhiman A, Georgieva A, Sarangapani R, Helmlinger G, Khalil IG.

FEBS Lett. 2005 Mar 21;579(8):1878-83. Review.

15.

Exploring expression data: identification and analysis of coexpressed genes.

Heyer LJ, Kruglyak S, Yooseph S.

Genome Res. 1999 Nov;9(11):1106-15. Review.

16.

Computational methods for analyzing dynamic regulatory networks.

Gitter A, Lu Y, Bar-Joseph Z.

Methods Mol Biol. 2010;674:419-41. doi: 10.1007/978-1-60761-854-6_24. Review.

PMID:
20827605
17.

Functional methods for quantifying agonists and antagonists.

Dougall LG.

J Recept Signal Transduct Res. 2001 May-Aug;21(2-3):117-37. Review.

PMID:
11757680

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