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Items: 1 to 20 of 47

1.

A structure-based method for protein sequence alignment.

Kann MG, Thiessen PA, Panchenko AR, Schäffer AA, Altschul SF, Bryant SH.

Bioinformatics. 2005 Apr 15;21(8):1451-6. Epub 2004 Dec 21.

PMID:
15613392
2.

Five hierarchical levels of sequence-structure correlation in proteins.

Bystroff C, Shao Y, Yuan X.

Appl Bioinformatics. 2004;3(2-3):97-104. Review.

PMID:
15693735
3.

Bioinformatics methods to predict protein structure and function. A practical approach.

Edwards YJ, Cottage A.

Mol Biotechnol. 2003 Feb;23(2):139-66. Review.

PMID:
12632698
4.

Multiple sequence alignments.

Wallace IM, Blackshields G, Higgins DG.

Curr Opin Struct Biol. 2005 Jun;15(3):261-6. Review.

PMID:
15963889
5.

Sensitive methods for determining the relatedness of proteins with limited sequence homology.

Argos P.

Curr Opin Biotechnol. 1994 Aug;5(4):361-71. Review.

PMID:
7765168
6.

Protein function from sequence and structure data.

Domingues FS, Lengauer T.

Appl Bioinformatics. 2003;2(1):3-12. Review.

PMID:
15130830
7.

Scores for sequence searches and alignments.

Henikoff S.

Curr Opin Struct Biol. 1996 Jun;6(3):353-60. Review.

PMID:
8804821
8.

Pairwise statistical significance and empirical determination of effective gap opening penalties for protein local sequence alignment.

Agrawal A, Brendel VP, Huang X.

Int J Comput Biol Drug Des. 2008;1(4):347-67. Review.

PMID:
20063463
9.

Prediction of protein-protein interaction based on structure.

Fernandez-Ballester G, Serrano L.

Methods Mol Biol. 2006;340:207-34. Review.

PMID:
16957339
10.

Identifying distantly related protein sequences.

Pearson WR.

Comput Appl Biosci. 1997 Aug;13(4):325-32. Review. No abstract available.

PMID:
9283747
11.

Exploiting evolutionary relationships for predicting protein structures.

Tramontano A, Morea V.

Biotechnol Bioeng. 2003 Dec 30;84(7):756-62. Review.

PMID:
14708116
12.

Unification of protein families.

Holm L.

Curr Opin Struct Biol. 1998 Jun;8(3):372-9. Review.

PMID:
9666334
13.

Omiga: a PC-based sequence analysis tool.

Kramer JA.

Mol Biotechnol. 2001 Sep;19(1):97-106. Review.

PMID:
11697223
14.

Methods for sequence-structure alignment.

Venclovas C.

Methods Mol Biol. 2012;857:55-82. doi: 10.1007/978-1-61779-588-6_3. Review.

PMID:
22323217
15.

Multiple sequence alignment as a guideline for protein engineering strategies.

Davidson AR.

Methods Mol Biol. 2006;340:171-81. Review.

PMID:
16957337
16.

Predicting the conformation of proteins from sequences. Progress and future progress.

Benner SA, Jenny TF, Cohen MA, Gonnet GH.

Adv Enzyme Regul. 1994;34:269-353. Review.

PMID:
7942279
17.

Searching protein structure databases has come of age.

Holm L, Sander C.

Proteins. 1994 Jul;19(3):165-73. Review.

PMID:
7937731
18.

Protein structure prediction.

Al-Lazikani B, Jung J, Xiang Z, Honig B.

Curr Opin Chem Biol. 2001 Feb;5(1):51-6. Review.

PMID:
11166648
19.

[Recent progress in multiple sequence alignment].

Yang F, Tang D, Bai Y, Zhao M, Zhu Q.

Sheng Wu Yi Xue Gong Cheng Xue Za Zhi. 2010 Aug;27(4):924-8. Review. Chinese.

PMID:
20842873
20.

Issues in searching molecular sequence databases.

Altschul SF, Boguski MS, Gish W, Wootton JC.

Nat Genet. 1994 Feb;6(2):119-29. Review.

PMID:
8162065

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