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Items: 1 to 20 of 29

1.

Testing a flexible-receptor docking algorithm in a model binding site.

Wei BQ, Weaver LH, Ferrari AM, Matthews BW, Shoichet BK.

J Mol Biol. 2004 Apr 9;337(5):1161-82.

PMID:
15046985
2.

Principles of docking: An overview of search algorithms and a guide to scoring functions.

Halperin I, Ma B, Wolfson H, Nussinov R.

Proteins. 2002 Jun 1;47(4):409-43. Review.

PMID:
12001221
3.

Accounting for conformational changes during protein-protein docking.

Zacharias M.

Curr Opin Struct Biol. 2010 Apr;20(2):180-6. doi: 10.1016/j.sbi.2010.02.001. Epub 2010 Mar 1. Review.

PMID:
20194014
4.

Automated docking of ligands to antibodies: methods and applications.

Sotriffer CA, Flader W, Winger RH, Rode BM, Liedl KR, Varga JM.

Methods. 2000 Mar;20(3):280-91. Review.

PMID:
10694451
5.

Hierarchical docking of databases of multiple ligand conformations.

Lorber DM, Shoichet BK.

Curr Top Med Chem. 2005;5(8):739-49. Review.

6.
7.

Different ligands-different receptor conformations: modeling of the hER alpha LBD in complex with agonists and antagonists.

Egner U, Heinrich N, Ruff M, Gangloff M, Mueller-Fahrnow A, Wurtz JM.

Med Res Rev. 2001 Nov;21(6):523-39. Review.

PMID:
11607933
8.

Automated docking of flexible ligands: applications of AutoDock.

Goodsell DS, Morris GM, Olson AJ.

J Mol Recognit. 1996 Jan-Feb;9(1):1-5. Review.

PMID:
8723313
9.

Docking small-molecule ligands into active sites.

Jones G, Willett P.

Curr Opin Biotechnol. 1995 Dec;6(6):652-6. Review.

PMID:
8527835
10.

Conformational flexibility models for the receptor in structure based drug design.

Teodoro ML, Kavraki LE.

Curr Pharm Des. 2003;9(20):1635-48. Review.

PMID:
12871062
11.

Lessons from the lysozyme of phage T4.

Baase WA, Liu L, Tronrud DE, Matthews BW.

Protein Sci. 2010 Apr;19(4):631-41. doi: 10.1002/pro.344. Review.

12.

Flexible ligand docking to multiple receptor conformations: a practical alternative.

Totrov M, Abagyan R.

Curr Opin Struct Biol. 2008 Apr;18(2):178-84. doi: 10.1016/j.sbi.2008.01.004. Epub 2008 Feb 25. Review.

13.

Protein-protein association kinetics and protein docking.

Camacho CJ, Vajda S.

Curr Opin Struct Biol. 2002 Feb;12(1):36-40. Review.

PMID:
11839487
14.

Immunoglobulin cross-reactivity examined by library screening, crystallography and docking studies.

Ramsland PA, Yuriev E, Edmundson AB.

Comb Chem High Throughput Screen. 2001 Aug;4(5):397-408. Review.

PMID:
11472228
15.

Flexible receptor docking for drug discovery.

Wong CF.

Expert Opin Drug Discov. 2015;10(11):1189-200. doi: 10.1517/17460441.2015.1078308. Epub 2015 Aug 26. Review.

PMID:
26313123
16.

Principles of flexible protein-protein docking.

Andrusier N, Mashiach E, Nussinov R, Wolfson HJ.

Proteins. 2008 Nov 1;73(2):271-89. doi: 10.1002/prot.22170. Review.

17.

Crystallographic studies of movement within proteins.

Phillips DC.

Biochem Soc Symp. 1981;(46):1-15. Review.

PMID:
7039619
18.

Lead discovery using molecular docking.

Shoichet BK, McGovern SL, Wei B, Irwin JJ.

Curr Opin Chem Biol. 2002 Aug;6(4):439-46. Review.

PMID:
12133718
19.

Accounting for global protein deformability during protein-protein and protein-ligand docking.

May A, Zacharias M.

Biochim Biophys Acta. 2005 Dec 30;1754(1-2):225-31. Epub 2005 Sep 12. Review.

PMID:
16214429
20.

Structure of the glucocorticoid receptor, a flexible protein that can adapt to different ligands.

Veleiro AS, Alvarez LD, Eduardo SL, Burton G.

ChemMedChem. 2010 May 3;5(5):649-59. doi: 10.1002/cmdc.201000014. Review. No abstract available.

PMID:
20333619

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