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Items: 1 to 20 of 22

1.

The PAS fold. A redefinition of the PAS domain based upon structural prediction.

Hefti MH, Fran├žoijs KJ, de Vries SC, Dixon R, Vervoort J.

Eur J Biochem. 2004 Mar;271(6):1198-208.

PMID:
15009198
2.

The SUPERFAMILY database in structural genomics.

Gough J.

Acta Crystallogr D Biol Crystallogr. 2002 Nov;58(Pt 11):1897-900. Epub 2002 Oct 21. Review.

PMID:
12393919
3.

Ligand-binding PAS domains in a genomic, cellular, and structural context.

Henry JT, Crosson S.

Annu Rev Microbiol. 2011;65:261-86. doi: 10.1146/annurev-micro-121809-151631. Review.

4.

ChSeq: A database of chameleon sequences.

Li W, Kinch LN, Karplus PA, Grishin NV.

Protein Sci. 2015 Jul;24(7):1075-86. doi: 10.1002/pro.2689. Epub 2015 Jun 16. Review.

5.

Pfam 10 years on: 10,000 families and still growing.

Sammut SJ, Finn RD, Bateman A.

Brief Bioinform. 2008 May;9(3):210-9. doi: 10.1093/bib/bbn010. Epub 2008 Mar 15. Review.

PMID:
18344544
6.

The history of the CATH structural classification of protein domains.

Sillitoe I, Dawson N, Thornton J, Orengo C.

Biochimie. 2015 Dec;119:209-17. doi: 10.1016/j.biochi.2015.08.004. Epub 2015 Aug 4. Review.

7.

Molecular replacement: tricks and treats.

Abergel C.

Acta Crystallogr D Biol Crystallogr. 2013 Nov;69(Pt 11):2167-73. doi: 10.1107/S0907444913015291. Epub 2013 Oct 12. Review.

8.

Overview of protein structural and functional folds.

Sun PD, Foster CE, Boyington JC.

Curr Protoc Protein Sci. 2004 May;Chapter 17:Unit 17.1. doi: 10.1002/0471140864.ps1701s35. Review.

PMID:
18429251
9.

Protein function annotation using protein domain family resources.

Das S, Orengo CA.

Methods. 2016 Jan 15;93:24-34. doi: 10.1016/j.ymeth.2015.09.029. Epub 2015 Oct 3. Review.

PMID:
26434392
10.

Protein fold recognition.

Jones D, Thornton J.

J Comput Aided Mol Des. 1993 Aug;7(4):439-56. Review.

PMID:
8229094
11.

Structural genomics: a pipeline for providing structures for the biologist.

Chance MR, Bresnick AR, Burley SK, Jiang JS, Lima CD, Sali A, Almo SC, Bonanno JB, Buglino JA, Boulton S, Chen H, Eswar N, He G, Huang R, Ilyin V, McMahan L, Pieper U, Ray S, Vidal M, Wang LK.

Protein Sci. 2002 Apr;11(4):723-38. Review. No abstract available.

12.

Standardized evaluation of protein stability.

Thomas A, Joris B, Brasseur R.

Biochim Biophys Acta. 2010 Jun;1804(6):1265-71. doi: 10.1016/j.bbapap.2010.02.008. Epub 2010 Feb 20. Review.

PMID:
20176144
14.

Classification of proteins with shared motifs and internal repeats in the ECOD database.

Schaeffer RD, Kinch LN, Liao Y, Grishin NV.

Protein Sci. 2016 Jul;25(7):1188-203. doi: 10.1002/pro.2893. Epub 2016 Feb 21. Review.

15.

The importance of short structural motifs in protein structure analysis.

Unger R, Sussman JL.

J Comput Aided Mol Des. 1993 Aug;7(4):457-72. Review.

PMID:
8229095
16.

Exploiting structural classifications for function prediction: towards a domain grammar for protein function.

Dessailly BH, Redfern OC, Cuff A, Orengo CA.

Curr Opin Struct Biol. 2009 Jun;19(3):349-56. doi: 10.1016/j.sbi.2009.03.009. Epub 2009 Apr 22. Review.

17.

An overview of comparative modelling and resources dedicated to large-scale modelling of genome sequences.

Lam SD, Das S, Sillitoe I, Orengo C.

Acta Crystallogr D Struct Biol. 2017 Aug 1;73(Pt 8):628-640. doi: 10.1107/S2059798317008920. Epub 2017 Jul 28. Review.

18.

Structural genomics: keeping up with expanding knowledge of the protein universe.

Grabowski M, Joachimiak A, Otwinowski Z, Minor W.

Curr Opin Struct Biol. 2007 Jun;17(3):347-53. Epub 2007 Jun 22. Review.

19.

Oligomer formation by 3D domain swapping: a model for protein assembly and misassembly.

Schlunegger MP, Bennett MJ, Eisenberg D.

Adv Protein Chem. 1997;50:61-122. Review. No abstract available.

PMID:
9338079
20.

Assignment of protein function in the postgenomic era.

Saghatelian A, Cravatt BF.

Nat Chem Biol. 2005 Aug;1(3):130-42. Review. Erratum in: Nat Chem Biol. 2005 Sep;1(4):233.

PMID:
16408016

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