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Alternative Polyadenylation: Methods, Findings, and Impacts.

Chen W, Jia Q, Song Y, Fu H, Wei G, Ni T.

Genomics Proteomics Bioinformatics. 2017 Oct;15(5):287-300. doi: 10.1016/j.gpb.2017.06.001. Epub 2017 Oct 12. Review.


Distinct regulation of alternative polyadenylation and gene expression by nuclear poly(A) polymerases.

Li W, Li W, Laishram RS, Hoque M, Ji Z, Tian B, Anderson RA.

Nucleic Acids Res. 2017 Sep 6;45(15):8930-8942. doi: 10.1093/nar/gkx560.


A genome-wide transcriptome and translatome analysis of Arabidopsis transposons identifies a unique and conserved genome expression strategy for Ty1/Copia retroelements.

Oberlin S, Sarazin A, Chevalier C, Voinnet O, Marí-Ordóñez A.

Genome Res. 2017 Sep;27(9):1549-1562. doi: 10.1101/gr.220723.117. Epub 2017 Aug 7.


Alternative exon definition events control the choice between nuclear retention and cytoplasmic export of U11/U12-65K mRNA.

Verbeeren J, Verma B, Niemelä EH, Yap K, Makeyev EV, Frilander MJ.

PLoS Genet. 2017 May 26;13(5):e1006824. doi: 10.1371/journal.pgen.1006824. eCollection 2017 May.


Exploring the Impact of Cleavage and Polyadenylation Factors on Pre-mRNA Splicing Across Eukaryotes.

Lepennetier G, Catania F.

G3 (Bethesda). 2017 Jul 5;7(7):2107-2114. doi: 10.1534/g3.117.041483.


Alternative polyadenylation of mRNA precursors.

Tian B, Manley JL.

Nat Rev Mol Cell Biol. 2017 Jan;18(1):18-30. doi: 10.1038/nrm.2016.116. Epub 2016 Sep 28. Review.


Evidence that a threshold of serine/arginine-rich (SR) proteins recruits CFIm to promote rous sarcoma virus mRNA 3' end formation.

Hudson SW, McNally LM, McNally MT.

Virology. 2016 Nov;498:181-191. doi: 10.1016/j.virol.2016.08.021. Epub 2016 Sep 4.


The Evolutionarily-conserved Polyadenosine RNA Binding Protein, Nab2, Cooperates with Splicing Machinery to Regulate the Fate of pre-mRNA.

Soucek S, Zeng Y, Bellur DL, Bergkessel M, Morris KJ, Deng Q, Duong D, Seyfried NT, Guthrie C, Staley JP, Fasken MB, Corbett AH.

Mol Cell Biol. 2016 Aug 15. pii: MCB.00402-16. [Epub ahead of print]


Intronic cleavage and polyadenylation regulates gene expression during DNA damage response through U1 snRNA.

Devany E, Park JY, Murphy MR, Zakusilo G, Baquero J, Zhang X, Hoque M, Tian B, Kleiman FE.

Cell Discov. 2016 Jun 14;2:16013. doi: 10.1038/celldisc.2016.13. eCollection 2016.


The alternative splicing program of differentiated smooth muscle cells involves concerted non-productive splicing of post-transcriptional regulators.

Llorian M, Gooding C, Bellora N, Hallegger M, Buckroyd A, Wang X, Rajgor D, Kayikci M, Feltham J, Ule J, Eyras E, Smith CW.

Nucleic Acids Res. 2016 Oct 14;44(18):8933-8950. Epub 2016 Jun 17.


Coupling between alternative polyadenylation and alternative splicing is limited to terminal introns.

Movassat M, Crabb TL, Busch A, Yao C, Reynolds DJ, Shi Y, Hertel KJ.

RNA Biol. 2016 Jul 2;13(7):646-55. doi: 10.1080/15476286.2016.1191727. Epub 2016 May 31.


mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster.

Lepennetier G, Catania F.

G3 (Bethesda). 2016 Jun 1;6(6):1617-26. doi: 10.1534/g3.116.029231.


Therapeutic activity of modified U1 core spliceosomal particles.

Rogalska ME, Tajnik M, Licastro D, Bussani E, Camparini L, Mattioli C, Pagani F.

Nat Commun. 2016 Apr 4;7:11168. doi: 10.1038/ncomms11168.


The reciprocal regulation between splicing and 3'-end processing.

Kaida D.

Wiley Interdiscip Rev RNA. 2016 Jul;7(4):499-511. doi: 10.1002/wrna.1348. Epub 2016 Mar 28. Review.


Conditional U1 Gene Silencing in Toxoplasma gondii.

Pieperhoff MS, Pall GS, Jiménez-Ruiz E, Das S, Melatti C, Gow M, Wong EH, Heng J, Müller S, Blackman MJ, Meissner M.

PLoS One. 2015 Jun 19;10(6):e0130356. doi: 10.1371/journal.pone.0130356. eCollection 2015.


RNA Binding Proteins that Control Human Papillomavirus Gene Expression.

Kajitani N, Schwartz S.

Biomolecules. 2015 May 5;5(2):758-74. doi: 10.3390/biom5020758. Review.


The end of the message: multiple protein-RNA interactions define the mRNA polyadenylation site.

Shi Y, Manley JL.

Genes Dev. 2015 May 1;29(9):889-97. doi: 10.1101/gad.261974.115. Review.


Systematic profiling of poly(A)+ transcripts modulated by core 3' end processing and splicing factors reveals regulatory rules of alternative cleavage and polyadenylation.

Li W, You B, Hoque M, Zheng D, Luo W, Ji Z, Park JY, Gunderson SI, Kalsotra A, Manley JL, Tian B.

PLoS Genet. 2015 Apr 23;11(4):e1005166. doi: 10.1371/journal.pgen.1005166. eCollection 2015 Apr.


The consensus 5' splice site motif inhibits mRNA nuclear export.

Lee ES, Akef A, Mahadevan K, Palazzo AF.

PLoS One. 2015 Mar 31;10(3):e0122743. doi: 10.1371/journal.pone.0122743. eCollection 2015.


An intimate view of a spliceosome component.

Nilsen TW.

Elife. 2015 Feb 13;4:e06200. doi: 10.7554/eLife.06200.

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