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Amphioxus SYCP1: a case of retrogene replacement and co-option of regulatory elements adjacent to the ParaHox cluster.

Garstang MG, Ferrier DEK.

Dev Genes Evol. 2018 Jan;228(1):13-30. doi: 10.1007/s00427-017-0600-9. Epub 2018 Jan 2.


Genome sequence of a diabetes-prone rodent reveals a mutation hotspot around the ParaHox gene cluster.

Hargreaves AD, Zhou L, Christensen J, Marlétaz F, Liu S, Li F, Jansen PG, Spiga E, Hansen MT, Pedersen SVH, Biswas S, Serikawa K, Fox BA, Taylor WR, Mulley JF, Zhang G, Heller RS, Holland PWH.

Proc Natl Acad Sci U S A. 2017 Jul 18;114(29):7677-7682. doi: 10.1073/pnas.1702930114. Epub 2017 Jul 3.


The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion.

Kao D, Lai AG, Stamataki E, Rosic S, Konstantinides N, Jarvis E, Di Donfrancesco A, Pouchkina-Stancheva N, Semon M, Grillo M, Bruce H, Kumar S, Siwanowicz I, Le A, Lemire A, Eisen MB, Extavour C, Browne WE, Wolff C, Averof M, Patel NH, Sarkies P, Pavlopoulos A, Aboobaker A.

Elife. 2016 Nov 16;5. pii: e20062. doi: 10.7554/eLife.20062.


Comparative transcriptomics enlarges the toolkit of known developmental genes in mollusks.

De Oliveira AL, Wollesen T, Kristof A, Scherholz M, Redl E, Todt C, Bleidorn C, Wanninger A.

BMC Genomics. 2016 Nov 10;17(1):905.


Hox and ParaHox gene expression in early body plan patterning of polyplacophoran mollusks.

Fritsch M, Wollesen T, Wanninger A.

J Exp Zool B Mol Dev Evol. 2016 Mar;326(2):89-104. doi: 10.1002/jez.b.22671. Epub 2016 Apr 21.


TCF/Lef regulates the Gsx ParaHox gene in central nervous system development in chordates.

Garstang MG, Osborne PW, Ferrier DE.

BMC Evol Biol. 2016 Mar 3;16:57. doi: 10.1186/s12862-016-0614-3.


The ParaHox gene Gsx patterns the apical organ and central nervous system but not the foregut in scaphopod and cephalopod mollusks.

Wollesen T, Rodríguez Monje SV, McDougall C, Degnan BM, Wanninger A.

Evodevo. 2015 Dec 29;6:41. doi: 10.1186/s13227-015-0037-z. eCollection 2015.


Did homeobox gene duplications contribute to the Cambrian explosion?

Holland PW.

Zoological Lett. 2015 Jan 13;1:1. doi: 10.1186/s40851-014-0004-x. eCollection 2015. Review.


Homeodomain proteins: an update.

Bürglin TR, Affolter M.

Chromosoma. 2016 Jun;125(3):497-521. doi: 10.1007/s00412-015-0543-8. Epub 2015 Oct 13. Review.


The TALE face of Hox proteins in animal evolution.

Merabet S, Galliot B.

Front Genet. 2015 Aug 18;6:267. doi: 10.3389/fgene.2015.00267. eCollection 2015.


Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution.

Marlétaz F, Maeso I, Faas L, Isaacs HV, Holland PW.

BMC Biol. 2015 Aug 1;13:56. doi: 10.1186/s12915-015-0165-x.


Role of HOXA9 in leukemia: dysregulation, cofactors and essential targets.

Collins CT, Hess JL.

Oncogene. 2016 Mar 3;35(9):1090-8. doi: 10.1038/onc.2015.174. Epub 2015 Jun 1. Review.


Reinforcing the egg-timer: recruitment of novel lophotrochozoa homeobox genes to early and late development in the pacific oyster.

Paps J, Xu F, Zhang G, Holland PW.

Genome Biol Evol. 2015 Jan 27;7(3):677-88. doi: 10.1093/gbe/evv018.


From dinosaurs to birds: a tail of evolution.

Rashid DJ, Chapman SC, Larsson HC, Organ CL, Bebin AG, Merzdorf CS, Bradley R, Horner JR.

Evodevo. 2014 Jul 29;5:25. doi: 10.1186/2041-9139-5-25. eCollection 2014. Review.


A Burst of miRNA Innovation in the Early Evolution of Butterflies and Moths.

Quah S, Hui JH, Holland PW.

Mol Biol Evol. 2015 May;32(5):1161-74. doi: 10.1093/molbev/msv004. Epub 2015 Jan 8.


Insulin-like genes in ascidians: findings in Ciona and hypotheses on the evolutionary origins of the pancreas.

Thompson JM, Di Gregorio A.

Genesis. 2015 Jan;53(1):82-104. doi: 10.1002/dvg.22832. Epub 2014 Nov 12. Review.


How Hox genes can shed light on the place of echinoderms among the deuterostomes.

David B, Mooi R.

Evodevo. 2014 Jun 17;5:22. doi: 10.1186/2041-9139-5-22. eCollection 2014.


Abdominal-B and caudal inhibit the formation of specific neuroblasts in the Drosophila tail region.

Birkholz O, Vef O, Rogulja-Ortmann A, Berger C, Technau GM.

Development. 2013 Sep;140(17):3552-64. doi: 10.1242/dev.096099. Epub 2013 Jul 31.


Time is of the essence for ParaHox homeobox gene clustering.

Garstang M, Ferrier DE.

BMC Biol. 2013 Jun 26;11:72. doi: 10.1186/1741-7007-11-72. Review.

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