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Items: 20

1.

Transcriptome analysis of human cumulus cells reveals hypoxia as the main determinant of follicular senescence.

Molinari E, Bar H, Pyle AM, Patrizio P.

Mol Hum Reprod. 2016 Aug;22(8):866-76. doi: 10.1093/molehr/gaw038. Epub 2016 Jun 6.

PMID:
27268410
2.

Chromosomal copy number variation reveals differential levels of genomic plasticity in distinct Trypanosoma cruzi strains.

Reis-Cunha JL, Rodrigues-Luiz GF, Valdivia HO, Baptista RP, Mendes TA, de Morais GL, Guedes R, Macedo AM, Bern C, Gilman RH, Lopez CT, Andersson B, Vasconcelos AT, Bartholomeu DC.

BMC Genomics. 2015 Jul 4;16:499. doi: 10.1186/s12864-015-1680-4.

3.

Whole-genome analysis of Exserohilum rostratum from an outbreak of fungal meningitis and other infections.

Litvintseva AP, Hurst S, Gade L, Frace MA, Hilsabeck R, Schupp JM, Gillece JD, Roe C, Smith D, Keim P, Lockhart SR, Changayil S, Weil MR, MacCannell DR, Brandt ME, Engelthaler DM.

J Clin Microbiol. 2014 Sep;52(9):3216-22. doi: 10.1128/JCM.00936-14. Epub 2014 Jun 20.

4.

Improved molecular typing assay for rhinovirus species A, B, and C.

Bochkov YA, Grindle K, Vang F, Evans MD, Gern JE.

J Clin Microbiol. 2014 Jul;52(7):2461-71. doi: 10.1128/JCM.00075-14. Epub 2014 Apr 30.

5.

ChromatoGate: A Tool for Detecting Base Mis-Calls in Multiple Sequence Alignments by Semi-Automatic Chromatogram Inspection.

Alachiotis N, Vogiatzi E, Pavlidis P, Stamatakis A.

Comput Struct Biotechnol J. 2013 May 8;6:e201303001. doi: 10.5936/csbj.201303001. eCollection 2013.

6.

Factors influencing the sensitivity and specificity of conventional sequencing in human immunodeficiency virus type 1 tropism testing.

Knapp DJ, McGovern RA, Dong W, Poon AF, Swenson LC, Zhong X, Woods CK, Harrigan PR.

J Clin Microbiol. 2013 Feb;51(2):444-51. doi: 10.1128/JCM.00739-12. Epub 2012 Nov 21.

7.

New virologic tools for management of chronic hepatitis B and C.

Chevaliez S, Rodriguez C, Pawlotsky JM.

Gastroenterology. 2012 May;142(6):1303-1313.e1. doi: 10.1053/j.gastro.2012.02.027. Review.

8.

Systematic comparison of three methods for fragmentation of long-range PCR products for next generation sequencing.

Knierim E, Lucke B, Schwarz JM, Schuelke M, Seelow D.

PLoS One. 2011;6(11):e28240. doi: 10.1371/journal.pone.0028240. Epub 2011 Nov 30.

9.

Population structure analyses and demographic history of the malaria vector Anopheles albimanus from the Caribbean and the Pacific regions of Colombia.

Gutiérrez LA, Naranjo NJ, Cienfuegos AV, Muskus CE, Luckhart S, Conn JE, Correa MM.

Malar J. 2009 Nov 19;8:259. doi: 10.1186/1475-2875-8-259.

10.

Estimation of nucleotide diversity, disequilibrium coefficients, and mutation rates from high-coverage genome-sequencing projects.

Lynch M.

Mol Biol Evol. 2008 Nov;25(11):2409-19. doi: 10.1093/molbev/msn185. Epub 2008 Aug 25.

11.

Incorporating experimental design and error into coalescent/mutation models of population history.

Knudsen B, Miyamoto MM.

Genetics. 2007 Aug;176(4):2335-42. Epub 2007 Jun 11.

12.

Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors?

Deshayes C, Perrodou E, Gallien S, Euphrasie D, Schaeffer C, Van-Dorsselaer A, Poch O, Lecompte O, Reyrat JM.

Genome Biol. 2007;8(2):R20.

13.
14.

Characterization of synthetic DNA bar codes in Saccharomyces cerevisiae gene-deletion strains.

Eason RG, Pourmand N, Tongprasit W, Herman ZS, Anthony K, Jejelowo O, Davis RW, Stolc V.

Proc Natl Acad Sci U S A. 2004 Jul 27;101(30):11046-51. Epub 2004 Jul 16.

15.

Tracking the evolution of the SARS coronavirus using high-throughput, high-density resequencing arrays.

Wong CW, Albert TJ, Vega VB, Norton JE, Cutler DJ, Richmond TA, Stanton LW, Liu ET, Miller LD.

Genome Res. 2004 Mar;14(3):398-405.

16.

Gene expression in the developing mouse retina by EST sequencing and microarray analysis.

Mu X, Zhao S, Pershad R, Hsieh TF, Scarpa A, Wang SW, White RA, Beremand PD, Thomas TL, Gan L, Klein WH.

Nucleic Acids Res. 2001 Dec 15;29(24):4983-93.

17.

Assembly, annotation, and integration of UNIGENE clusters into the human genome draft.

Zhuo D, Zhao WD, Wright FA, Yang HY, Wang JP, Sears R, Baer T, Kwon DH, Gordon D, Gibbs S, Dai D, Yang Q, Spitzner J, Krahe R, Stredney D, Stutz A, Yuan B.

Genome Res. 2001 May;11(5):904-18.

18.

Basecalling with LifeTrace.

Walther D, Bartha G, Morris M.

Genome Res. 2001 May;11(5):875-88.

19.
20.

Sequence-tagged connectors: a sequence approach to mapping and scanning the human genome.

Mahairas GG, Wallace JC, Smith K, Swartzell S, Holzman T, Keller A, Shaker R, Furlong J, Young J, Zhao S, Adams MD, Hood L.

Proc Natl Acad Sci U S A. 1999 Aug 17;96(17):9739-44.

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