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The Phenotypic Plasticity of Duplicated Genes in Saccharomyces cerevisiae and the Origin of Adaptations.

Mattenberger F, Sabater-Muñoz B, Toft C, Fares MA.

G3 (Bethesda). 2017 Jan 5;7(1):63-75. doi: 10.1534/g3.116.035329.


Tempo and mode of gene duplication in mammalian ribosomal protein evolution.

Dharia AP, Obla A, Gajdosik MD, Simon A, Nelson CE.

PLoS One. 2014 Nov 4;9(11):e111721. doi: 10.1371/journal.pone.0111721. eCollection 2014.


Genetic redundancy strengthens the circadian clock leading to a narrow entrainment range.

Erzberger A, Hampp G, Granada AE, Albrecht U, Herzel H.

J R Soc Interface. 2013 May 15;10(84):20130221. doi: 10.1098/rsif.2013.0221. Print 2013 Jul 6.


Prevalent role of gene features in determining evolutionary fates of whole-genome duplication duplicated genes in flowering plants.

Jiang WK, Liu YL, Xia EH, Gao LZ.

Plant Physiol. 2013 Apr;161(4):1844-61. doi: 10.1104/pp.112.200147. Epub 2013 Feb 8.


Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants.

De Smet R, Adams KL, Vandepoele K, Van Montagu MC, Maere S, Van de Peer Y.

Proc Natl Acad Sci U S A. 2013 Feb 19;110(8):2898-903. doi: 10.1073/pnas.1300127110. Epub 2013 Feb 4.


The odds of duplicate gene persistence after polyploidization.

Chain FJ, Dushoff J, Evans BJ.

BMC Genomics. 2011 Dec 12;12:599. doi: 10.1186/1471-2164-12-599.


An alternative approach to medical genetics based on modern evolutionary biology. Part 5: epigenetics and genomics.

Ryan FP.

J R Soc Med. 2009 Dec;102(12):531-7. doi: 10.1258/jrsm.2009.090365. Review. No abstract available.


KEPE--a motif frequently superimposed on sumoylation sites in metazoan chromatin proteins and transcription factors.

Diella F, Chabanis S, Luck K, Chica C, Ramu C, Nerlov C, Gibson TJ.

Bioinformatics. 2009 Jan 1;25(1):1-5. doi: 10.1093/bioinformatics/btn594. Epub 2008 Nov 24.


Preferential subfunctionalization of slow-evolving genes after allopolyploidization in Xenopus laevis.

Sémon M, Wolfe KH.

Proc Natl Acad Sci U S A. 2008 Jun 17;105(24):8333-8. doi: 10.1073/pnas.0708705105. Epub 2008 Jun 9.


Duplicate gene evolution and expression in the wake of vertebrate allopolyploidization.

Chain FJ, Ilieva D, Evans BJ.

BMC Evol Biol. 2008 Feb 8;8:43. doi: 10.1186/1471-2148-8-43.


The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication.

Presser A, Elowitz MB, Kellis M, Kishony R.

Proc Natl Acad Sci U S A. 2008 Jan 22;105(3):950-4. doi: 10.1073/pnas.0707293105. Epub 2008 Jan 16.


Exploring the molecular etiology of dominant-negative mutations.

Veitia RA.

Plant Cell. 2007 Dec;19(12):3843-51. Epub 2007 Dec 14. Review. No abstract available.


Many genes in fish have species-specific asymmetric rates of molecular evolution.

Steinke D, Salzburger W, Braasch I, Meyer A.

BMC Genomics. 2006 Feb 8;7:20.


Paralogs in polyploids: one for all and all for one?

Veitia RA.

Plant Cell. 2005 Jan;17(1):4-11. Review. No abstract available.


Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution.

Blanc G, Wolfe KH.

Plant Cell. 2004 Jul;16(7):1679-91. Epub 2004 Jun 18.


Preferential duplication of conserved proteins in eukaryotic genomes.

Davis JC, Petrov DA.

PLoS Biol. 2004 Mar;2(3):E55. Epub 2004 Mar 16.


Asymmetric sequence divergence of duplicate genes.

Conant GC, Wagner A.

Genome Res. 2003 Sep;13(9):2052-8.


The hidden duplication past of Arabidopsis thaliana.

Simillion C, Vandepoele K, Van Montagu MC, Zabeau M, Van de Peer Y.

Proc Natl Acad Sci U S A. 2002 Oct 15;99(21):13627-32. Epub 2002 Oct 8.


Wanda: a database of duplicated fish genes.

Van de Peer Y, Taylor JS, Joseph J, Meyer A.

Nucleic Acids Res. 2002 Jan 1;30(1):109-12.

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