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Items: 1 to 20 of 109


Genetic dissection of seed oil and protein content and identification of networks associated with oil content in Brassica napus.

Chao H, Wang H, Wang X, Guo L, Gu J, Zhao W, Li B, Chen D, Raboanatahiry N, Li M.

Sci Rep. 2017 Apr 10;7:46295. doi: 10.1038/srep46295.


ThermoAlign: a genome-aware primer design tool for tiled amplicon resequencing.

Francis F, Dumas MD, Wisser RJ.

Sci Rep. 2017 Mar 16;7:44437. doi: 10.1038/srep44437.


The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity.

Verde I, Jenkins J, Dondini L, Micali S, Pagliarani G, Vendramin E, Paris R, Aramini V, Gazza L, Rossini L, Bassi D, Troggio M, Shu S, Grimwood J, Tartarini S, Dettori MT, Schmutz J.

BMC Genomics. 2017 Mar 11;18(1):225. doi: 10.1186/s12864-017-3606-9.


Genome-Wide Identification and Transferability of Microsatellite Markers between Palmae Species.

Xiao Y, Xia W, Ma J, Mason AS, Fan H, Shi P, Lei X, Ma Z, Peng M.

Front Plant Sci. 2016 Oct 25;7:1578. eCollection 2016.


Genome-wide Association Study Identifies New Loci for Resistance to Sclerotinia Stem Rot in Brassica napus.

Wu J, Zhao Q, Liu S, Shahid M, Lan L, Cai G, Zhang C, Fan C, Wang Y, Zhou Y.

Front Plant Sci. 2016 Sep 20;7:1418. eCollection 2016.


GMATA: An Integrated Software Package for Genome-Scale SSR Mining, Marker Development and Viewing.

Wang X, Wang L.

Front Plant Sci. 2016 Sep 13;7:1350. doi: 10.3389/fpls.2016.01350. eCollection 2016.


A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant-microbe interactions and legume evolution.

Hane JK, Ming Y, Kamphuis LG, Nelson MN, Garg G, Atkins CA, Bayer PE, Bravo A, Bringans S, Cannon S, Edwards D, Foley R, Gao LL, Harrison MJ, Huang W, Hurgobin B, Li S, Liu CW, McGrath A, Morahan G, Murray J, Weller J, Jian J, Singh KB.

Plant Biotechnol J. 2017 Mar;15(3):318-330. doi: 10.1111/pbi.12615. Epub 2016 Sep 23.


Large-scale development of SSR markers in tobacco and construction of a linkage map in flue-cured tobacco.

Tong Z, Xiao B, Jiao F, Fang D, Zeng J, Wu X, Chen X, Yang J, Li Y.

Breed Sci. 2016 Jun;66(3):381-90. doi: 10.1270/jsbbs.15129. Epub 2016 May 26.


Indel Group in Genomes (IGG) Molecular Genetic Markers.

Toal TW, Burkart-Waco D, Howell T, Ron M, Kuppu S, Britt A, Chetelat R, Brady SM.

Plant Physiol. 2016 Sep;172(1):38-61. doi: 10.1104/pp.16.00354. Epub 2016 Jul 19.


A new resource for the development of SSR markers: Millions of loci from a thousand plant transcriptomes.

Hodel RG, Gitzendanner MA, Germain-Aubrey CC, Liu X, Crowl AA, Sun M, Landis JB, Segovia-Salcedo MC, Douglas NA, Chen S, Soltis DE, Soltis PS.

Appl Plant Sci. 2016 Jun 16;4(6). pii: apps.1600024. doi: 10.3732/apps.1600024. eCollection 2016 Jun.


Anchoring genome sequence to chromosomes of the central bearded dragon (Pogona vitticeps) enables reconstruction of ancestral squamate macrochromosomes and identifies sequence content of the Z chromosome.

Deakin JE, Edwards MJ, Patel H, O'Meally D, Lian J, Stenhouse R, Ryan S, Livernois AM, Azad B, Holleley CE, Li Q, Georges A.

BMC Genomics. 2016 Jun 10;17:447. doi: 10.1186/s12864-016-2774-3.


Genomic survey sequencing for development and validation of single-locus SSR markers in peanut (Arachis hypogaea L.).

Zhou X, Dong Y, Zhao J, Huang L, Ren X, Chen Y, Huang S, Liao B, Lei Y, Yan L, Jiang H.

BMC Genomics. 2016 Jun 1;17:420. doi: 10.1186/s12864-016-2743-x.


Structure and evolutionary history of a large family of NLR proteins in the zebrafish.

Howe K, Schiffer PH, Zielinski J, Wiehe T, Laird GK, Marioni JC, Soylemez O, Kondrashov F, Leptin M.

Open Biol. 2016 Apr;6(4):160009. doi: 10.1098/rsob.160009. Epub 2016 Apr 27.


Indica rice genome assembly, annotation and mining of blast disease resistance genes.

Mahesh HB, Shirke MD, Singh S, Rajamani A, Hittalmani S, Wang GL, Gowda M.

BMC Genomics. 2016 Mar 16;17:242. doi: 10.1186/s12864-016-2523-7.


Towards Plant Species Identification in Complex Samples: A Bioinformatics Pipeline for the Identification of Novel Nuclear Barcode Candidates.

Angers-Loustau A, Petrillo M, Paracchini V, Kagkli DM, Rischitor PE, Puertas Gallardo A, Patak A, Querci M, Kreysa J.

PLoS One. 2016 Jan 25;11(1):e0147692. doi: 10.1371/journal.pone.0147692. eCollection 2016.


SBMDb: first whole genome putative microsatellite DNA marker database of sugarbeet for bioenergy and industrial applications.

Iquebal MA, Jaiswal S, Angadi UB, Sablok G, Arora V, Kumar S, Rai A, Kumar D.

Database (Oxford). 2015 Dec 8;2015. pii: bav111. doi: 10.1093/database/bav111. Print 2015.


Development of Genome-Wide Insertion and Deletion Polymorphism Markers from Next-Generation Sequencing Data in Rice.

Liu J, Li J, Qu J, Yan S.

Rice (N Y). 2015 Dec;8(1):63. doi: 10.1186/s12284-015-0063-4. Epub 2015 Aug 14.


Development of genome-wide insertion and deletion markers for maize, based on next-generation sequencing data.

Liu J, Qu J, Yang C, Tang D, Li J, Lan H, Rong T.

BMC Genomics. 2015 Aug 13;16:601. doi: 10.1186/s12864-015-1797-5.


Genome-wide analysis of the gene families of resistance gene analogues in cotton and their response to Verticillium wilt.

Chen JY, Huang JQ, Li NY, Ma XF, Wang JL, Liu C, Liu YF, Liang Y, Bao YM, Dai XF.

BMC Plant Biol. 2015 Jun 19;15:148. doi: 10.1186/s12870-015-0508-3.

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