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Noncoding Variants Functional Prioritization Methods Based on Predicted Regulatory Factor Binding Sites.

Fu H; LianpingYang, Zhang X.

Curr Genomics. 2017 Aug;18(4):322-331. doi: 10.2174/1389202918666170228143619. Review.


A sugarcane R2R3-MYB transcription factor gene is alternatively spliced during drought stress.

Guo J, Ling H, Ma J, Chen Y, Su Y, Lin Q, Gao S, Wang H, Que Y, Xu L.

Sci Rep. 2017 Feb 7;7:41922. doi: 10.1038/srep41922.


Intron-Mediated Enhancement: A Tool for Heterologous Gene Expression in Plants?

Laxa M.

Front Plant Sci. 2017 Jan 6;7:1977. doi: 10.3389/fpls.2016.01977. eCollection 2016. Review.


Silencing of AP-4 inhibits proliferation, induces cell cycle arrest and promotes apoptosis in human lung cancer cells.

Hu X, Guo W, Chen S, Xu Y, Li P, Wang H, Chu H, Li J, DU Y, Chen X, Zhang G, Zhao G.

Oncol Lett. 2016 Jun;11(6):3735-3742. Epub 2016 Apr 18.


REGULATOR: a database of metazoan transcription factors and maternal factors for developmental studies.

Wang K, Nishida H.

BMC Bioinformatics. 2015 Apr 10;16:114. doi: 10.1186/s12859-015-0552-x.


Comparative overview of RNA polymerase II and III transcription cycles, with focus on RNA polymerase III termination and reinitiation.

Arimbasseri AG, Rijal K, Maraia RJ.

Transcription. 2014;5(1):e27639. doi: 10.4161/trns.27369. Review.


Predicting expression: the complementary power of histone modification and transcription factor binding data.

Budden DM, Hurley DG, Cursons J, Markham JF, Davis MJ, Crampin EJ.

Epigenetics Chromatin. 2014 Nov 24;7(1):36. doi: 10.1186/1756-8935-7-36. eCollection 2014.


Epigenetic modifications are associated with inter-species gene expression variation in primates.

Zhou X, Cain CE, Myrthil M, Lewellen N, Michelini K, Davenport ER, Stephens M, Pritchard JK, Gilad Y.

Genome Biol. 2014;15(12):547.


Nucleotide excision repair/transcription gene defects in the fetus and impaired TFIIH-mediated function in transcription in placenta leading to preeclampsia.

Moslehi R, Ambroggio X, Nagarajan V, Kumar A, Dzutsev A.

BMC Genomics. 2014 May 15;15:373. doi: 10.1186/1471-2164-15-373.


The basal transcription machinery as a target for cancer therapy.

Villicaña C, Cruz G, Zurita M.

Cancer Cell Int. 2014 Feb 28;14(1):18. doi: 10.1186/1475-2867-14-18.


cis-Acting elements and trans-acting factors in the transcriptional regulation of raf kinase inhibitory protein expression.

Zhang B, Wang O, Qin J, Liu S, Sun S, Liu H, Kuang J, Jiang G, Zhang W.

PLoS One. 2013 Dec 26;8(12):e83097. doi: 10.1371/journal.pone.0083097. eCollection 2013.


Genome-wide computational prediction and analysis of core promoter elements across plant monocots and dicots.

Kumari S, Ware D.

PLoS One. 2013 Oct 29;8(10):e79011. doi: 10.1371/journal.pone.0079011. eCollection 2013.


Integrative transcriptome analysis reveals dysregulation of canonical cancer molecular pathways in placenta leading to preeclampsia.

Moslehi R, Mills JL, Signore C, Kumar A, Ambroggio X, Dzutsev A.

Sci Rep. 2013;3:2407. doi: 10.1038/srep02407.


Layered signaling regulatory networks analysis of gene expression involved in malignant tumorigenesis of non-resolving ulcerative colitis via integration of cross-study microarray profiles.

Fan S, Pan Z, Geng Q, Li X, Wang Y, An Y, Xu Y, Tie L, Pan Y, Li X.

PLoS One. 2013 Jun 25;8(6):e67142. doi: 10.1371/journal.pone.0067142. Print 2013.


Identifying cross-category relations in gene ontology and constructing genome-specific term association networks.

Peng J, Chen J, Wang Y.

BMC Bioinformatics. 2013;14 Suppl 2:S15. doi: 10.1186/1471-2105-14-S2-S15. Epub 2013 Jan 21.


Modeling B-a transformations of the DNA double helix.

Volkov SN.

J Biol Phys. 2005 Dec;31(3-4):323-37. doi: 10.1007/s10867-005-1284-3.


Discovery of cell compartment specific protein-protein interactions using affinity purification combined with tandem mass spectrometry.

Lavallée-Adam M, Rousseau J, Domecq C, Bouchard A, Forget D, Faubert D, Blanchette M, Coulombe B.

J Proteome Res. 2013 Jan 4;12(1):272-81. doi: 10.1021/pr300778b. Epub 2012 Dec 4.


Phenotype-specific adverse effects of XPD mutations on human prenatal development implicate impairment of TFIIH-mediated functions in placenta.

Moslehi R, Kumar A, Mills JL, Ambroggio X, Signore C, Dzutsev A.

Eur J Hum Genet. 2012 Jun;20(6):626-31. doi: 10.1038/ejhg.2011.249. Epub 2012 Jan 11.


Structural basis for promoter-10 element recognition by the bacterial RNA polymerase σ subunit.

Feklistov A, Darst SA.

Cell. 2011 Dec 9;147(6):1257-69. doi: 10.1016/j.cell.2011.10.041. Epub 2011 Dec 1.


HMG-CoA reductase activation and urinary pellet cholesterol elevations in acute kidney injury.

Johnson AC, Ware LB, Himmelfarb J, Zager RA.

Clin J Am Soc Nephrol. 2011 Sep;6(9):2108-13. doi: 10.2215/CJN.02440311. Epub 2011 Jul 28.

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