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Items: 1 to 20 of 414


Equilibrium folding dynamics of meACP in water, heavy water, and low concentration of urea.

Zhou Y, Yang D.

Sci Rep. 2017 Nov 23;7(1):16156. doi: 10.1038/s41598-017-16449-4.


Accelerating physical simulations of proteins by leveraging external knowledge.

Perez A, Morrone JA, Dill KA.

Wiley Interdiscip Rev Comput Mol Sci. 2017 Sep-Oct;7(5). pii: e1309. doi: 10.1002/wcms.1309. Epub 2017 Apr 19.


Evolution of protein-coupled RNA dynamics during hierarchical assembly of ribosomal complexes.

Abeysirigunawardena SC, Kim H, Lai J, Ragunathan K, Rappé MC, Luthey-Schulten Z, Ha T, Woodson SA.

Nat Commun. 2017 Sep 8;8(1):492. doi: 10.1038/s41467-017-00536-1.


Time-resolved observation of protein allosteric communication.

Buchenberg S, Sittel F, Stock G.

Proc Natl Acad Sci U S A. 2017 Aug 15;114(33):E6804-E6811. doi: 10.1073/pnas.1707694114. Epub 2017 Jul 31.


Plasticity in the Oxidative Folding Pathway of the High Affinity Nerita Versicolor Carboxypeptidase Inhibitor (NvCI).

Esperante SA, Covaleda G, Trejo SA, Bronsoms S, Aviles FX, Ventura S.

Sci Rep. 2017 Jul 14;7(1):5457. doi: 10.1038/s41598-017-05657-7.


The case for defined protein folding pathways.

Englander SW, Mayne L.

Proc Natl Acad Sci U S A. 2017 Aug 1;114(31):8253-8258. doi: 10.1073/pnas.1706196114. Epub 2017 Jun 19.


Evolving Notch polyQ tracts reveal possible solenoid interference elements.

Erives AJ.

PLoS One. 2017 Mar 20;12(3):e0174253. doi: 10.1371/journal.pone.0174253. eCollection 2017.


Integrated view of internal friction in unfolded proteins from single-molecule FRET, contact quenching, theory, and simulations.

Soranno A, Holla A, Dingfelder F, Nettels D, Makarov DE, Schuler B.

Proc Natl Acad Sci U S A. 2017 Mar 7;114(10):E1833-E1839. doi: 10.1073/pnas.1616672114. Epub 2017 Feb 21.


Frozen in Time: The History of Proteins.

Kovacs NA, Petrov AS, Lanier KA, Williams LD.

Mol Biol Evol. 2017 May 1;34(5):1252-1260. doi: 10.1093/molbev/msx086.


The Levinthal Problem in Amyloid Aggregation: Sampling of a Flat Reaction Space.

Jia Z, Beugelsdijk A, Chen J, Schmit JD.

J Phys Chem B. 2017 Feb 23;121(7):1576-1586. doi: 10.1021/acs.jpcb.7b00253. Epub 2017 Feb 13.


Folding of apomyoglobin: Analysis of transient intermediate structure during refolding using quick hydrogen deuterium exchange and NMR.

Nishimura C.

Proc Jpn Acad Ser B Phys Biol Sci. 2017;93(1):10-27. doi: 10.2183/pjab.93.002. Review.


Systematic alanine insertion reveals the essential regions that encode structure formation and activity of dihydrofolate reductase.

Shiba R, Umeyama M, Tsukasa S, Kamikubo H, Yamazaki Y, Yamaguchi M, Iwakura M, Kataoka M.

Biophysics (Nagoya-shi). 2011 Jan 19;7:1-10. eCollection 2011.


Evidence from mixed hydrate nucleation for a funnel model of crystallization.

Hall KW, Carpendale S, Kusalik PG.

Proc Natl Acad Sci U S A. 2016 Oct 25;113(43):12041-12046. Epub 2016 Oct 6.


The Ribosome Restrains Molten Globule Formation in Stalled Nascent Flavodoxin.

Houwman JA, André E, Westphal AH, van Berkel WJ, van Mierlo CP.

J Biol Chem. 2016 Dec 9;291(50):25911-25920. Epub 2016 Oct 26.


Structural Interface Forms and Their Involvement in Stabilization of Multidomain Proteins or Protein Complexes.

Dygut J, Kalinowska B, Banach M, Piwowar M, Konieczny L, Roterman I.

Int J Mol Sci. 2016 Oct 18;17(10). pii: E1741.


Exploring the Levinthal limit in protein folding.

Cruzeiro L, Degrève L.

J Biol Phys. 2017 Mar;43(1):15-30. doi: 10.1007/s10867-016-9431-6. Epub 2016 Oct 14.


Smoothing a rugged protein folding landscape by sequence-based redesign.

Porebski BT, Keleher S, Hollins JJ, Nickson AA, Marijanovic EM, Borg NA, Costa MG, Pearce MA, Dai W, Zhu L, Irving JA, Hoke DE, Kass I, Whisstock JC, Bottomley SP, Webb GI, McGowan S, Buckle AM.

Sci Rep. 2016 Sep 26;6:33958. doi: 10.1038/srep33958.


Consistent View of Polypeptide Chain Expansion in Chemical Denaturants from Multiple Experimental Methods.

Borgia A, Zheng W, Buholzer K, Borgia MB, Schüler A, Hofmann H, Soranno A, Nettels D, Gast K, Grishaev A, Best RB, Schuler B.

J Am Chem Soc. 2016 Sep 14;138(36):11714-26. doi: 10.1021/jacs.6b05917. Epub 2016 Sep 1.

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