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Items: 1 to 20 of 36

1.

Alcohol and nicotine codependence-associated DNA methylation changes in promoter regions of addiction-related genes.

Xu H, Wang F, Kranzler HR, Gelernter J, Zhang H.

Sci Rep. 2017 Feb 6;7:41816. doi: 10.1038/srep41816.

2.

4C-seq revealed long-range interactions of a functional enhancer at the 8q24 prostate cancer risk locus.

Cai M, Kim S, Wang K, Farnham PJ, Coetzee GA, Lu W.

Sci Rep. 2016 Mar 3;6:22462. doi: 10.1038/srep22462.

3.

Uncovering drug-responsive regulatory elements.

Luizon MR, Ahituv N.

Pharmacogenomics. 2015 Nov;16(16):1829-41. doi: 10.2217/pgs.15.121. Epub 2015 Nov 10. Review.

4.

The search for cis-regulatory driver mutations in cancer genomes.

Poulos RC, Sloane MA, Hesson LB, Wong JW.

Oncotarget. 2015 Oct 20;6(32):32509-25. doi: 10.18632/oncotarget.5085. Review.

5.

Interaction of Yna1 and Yna2 Is Required for Nuclear Accumulation and Transcriptional Activation of the Nitrate Assimilation Pathway in the Yeast Hansenula polymorpha.

Silvestrini L, Rossi B, Gallmetzer A, Mathieu M, Scazzocchio C, Berardi E, Strauss J.

PLoS One. 2015 Sep 3;10(9):e0135416. doi: 10.1371/journal.pone.0135416. eCollection 2015.

6.

An integrative analysis of TFBS-clustered regions reveals new transcriptional regulation models on the accessible chromatin landscape.

Chen H, Li H, Liu F, Zheng X, Wang S, Bo X, Shu W.

Sci Rep. 2015 Feb 16;5:8465. doi: 10.1038/srep08465.

7.

A chromatin structure-based model accurately predicts DNA replication timing in human cells.

Gindin Y, Valenzuela MS, Aladjem MI, Meltzer PS, Bilke S.

Mol Syst Biol. 2014 Mar 28;10:722. doi: 10.1002/msb.134859.

8.

Genome-enabled prediction of quantitative traits in chickens using genomic annotation.

Morota G, Abdollahi-Arpanahi R, Kranis A, Gianola D.

BMC Genomics. 2014 Feb 7;15:109. doi: 10.1186/1471-2164-15-109.

9.

The accessible chromatin landscape of the human genome.

Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, Vernot B, Garg K, John S, Sandstrom R, Bates D, Boatman L, Canfield TK, Diegel M, Dunn D, Ebersol AK, Frum T, Giste E, Johnson AK, Johnson EM, Kutyavin T, Lajoie B, Lee BK, Lee K, London D, Lotakis D, Neph S, Neri F, Nguyen ED, Qu H, Reynolds AP, Roach V, Safi A, Sanchez ME, Sanyal A, Shafer A, Simon JM, Song L, Vong S, Weaver M, Yan Y, Zhang Z, Zhang Z, Lenhard B, Tewari M, Dorschner MO, Hansen RS, Navas PA, Stamatoyannopoulos G, Iyer VR, Lieb JD, Sunyaev SR, Akey JM, Sabo PJ, Kaul R, Furey TS, Dekker J, Crawford GE, Stamatoyannopoulos JA.

Nature. 2012 Sep 6;489(7414):75-82. doi: 10.1038/nature11232.

10.

AMP-activated protein kinase regulates beta-catenin transcription via histone deacetylase 5.

Zhao JX, Yue WF, Zhu MJ, Du M.

J Biol Chem. 2011 May 6;286(18):16426-34. doi: 10.1074/jbc.M110.199372. Epub 2011 Mar 17.

11.

Cation charge dependence of the forces driving DNA assembly.

DeRouchey J, Parsegian VA, Rau DC.

Biophys J. 2010 Oct 20;99(8):2608-15. doi: 10.1016/j.bpj.2010.08.028.

12.

ChIP on SNP-chip for genome-wide analysis of human histone H4 hyperacetylation.

McCann JA, Muro EM, Palmer C, Palidwor G, Porter CJ, Andrade-Navarro MA, Rudnicki MA.

BMC Genomics. 2007 Sep 14;8:322.

13.

A distant upstream locus control region is critical for expression of the Kit receptor gene in mast cells.

Berrozpe G, Agosti V, Tucker C, Blanpain C, Manova K, Besmer P.

Mol Cell Biol. 2006 Aug;26(15):5850-60.

14.

Structure and function of the SWIRM domain, a conserved protein module found in chromatin regulatory complexes.

Da G, Lenkart J, Zhao K, Shiekhattar R, Cairns BR, Marmorstein R.

Proc Natl Acad Sci U S A. 2006 Feb 14;103(7):2057-62. Epub 2006 Feb 3.

15.

Long-range histone acetylation of the Ifng gene is an essential feature of T cell differentiation.

Zhou W, Chang S, Aune TM.

Proc Natl Acad Sci U S A. 2004 Feb 24;101(8):2440-5.

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Histone deacetylases in fungi: novel members, new facts.

Trojer P, Brandtner EM, Brosch G, Loidl P, Galehr J, Linzmaier R, Haas H, Mair K, Tribus M, Graessle S.

Nucleic Acids Res. 2003 Jul 15;31(14):3971-81.

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