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Items: 1 to 20 of 28


Homeodomain proteins: an update.

Bürglin TR, Affolter M.

Chromosoma. 2016 Jun;125(3):497-521. doi: 10.1007/s00412-015-0543-8. Review.


Physics-based potentials for the coupling between backbone- and side-chain-local conformational states in the UNited RESidue (UNRES) force field for protein simulations.

Sieradzan AK, Krupa P, Scheraga HA, Liwo A, Czaplewski C.

J Chem Theory Comput. 2015 Feb 10;11(2):817-31. doi: 10.1021/ct500736a.


The early expansion and evolutionary dynamics of POU class genes.

Gold DA, Gates RD, Jacobs DK.

Mol Biol Evol. 2014 Dec;31(12):3136-47. doi: 10.1093/molbev/msu243.


Mutations in linker histone genes HIST1H1 B, C, D, and E; OCT2 (POU2F2); IRF8; and ARID1A underlying the pathogenesis of follicular lymphoma.

Li H, Kaminski MS, Li Y, Yildiz M, Ouillette P, Jones S, Fox H, Jacobi K, Saiya-Cork K, Bixby D, Lebovic D, Roulston D, Shedden K, Sabel M, Marentette L, Cimmino V, Chang AE, Malek SN.

Blood. 2014 Mar 6;123(10):1487-98. doi: 10.1182/blood-2013-05-500264.


Improvement of the treatment of loop structures in the UNRES force field by inclusion of coupling between backbone- and side-chain-local conformational states.

Krupa P, Sieradzan AK, Rackovsky S, Baranowski M, Ołldziej S, Scheraga HA, Liwo A, Czaplewski C.

J Chem Theory Comput. 2013 Oct 8;9(10). doi: 10.1021/ct4004977.


Structural basis for recognition of the matrix attachment region of DNA by transcription factor SATB1.

Yamasaki K, Akiba T, Yamasaki T, Harata K.

Nucleic Acids Res. 2007;35(15):5073-84.


Protein structure prediction by all-atom free-energy refinement.

Verma A, Wenzel W.

BMC Struct Biol. 2007 Mar 19;7:12.


The Pseudomonas quorum-sensing regulator RsaL belongs to the tetrahelical superclass of H-T-H proteins.

Rampioni G, Polticelli F, Bertani I, Righetti K, Venturi V, Zennaro E, Leoni L.

J Bacteriol. 2007 Mar;189(5):1922-30.


A method for optimizing potential-energy functions by a hierarchical design of the potential-energy landscape: application to the UNRES force field.

Liwo A, Arłukowicz P, Czaplewski C, Ołdziej S, Pillardy J, Scheraga HA.

Proc Natl Acad Sci U S A. 2002 Feb 19;99(4):1937-42.


Jun kinase phosphorylates and regulates the DNA binding activity of an octamer binding protein, T-cell factor beta1.

Kasibhatla S, Tailor P, Bonefoy-Berard N, Mustelin T, Altman A, Fotedar A.

Mol Cell Biol. 1999 Mar;19(3):2021-31.


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