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Vibrational analysis on the revised potential energy curve of the low-barrier hydrogen bond in photoactive yellow protein.

Kanematsu Y, Kamikubo H, Kataoka M, Tachikawa M.

Comput Struct Biotechnol J. 2015 Oct 31;14:16-9. doi: 10.1016/j.csbj.2015.10.003.


Room temperature structures beyond 1.5 Å by serial femtosecond crystallography.

Schmidt M, Pande K, Basu S, Tenboer J.

Struct Dyn. 2015 May 7;2(4):041708. doi: 10.1063/1.4919903.


A split-beam probe-pump-probe scheme for femtosecond time resolved protein X-ray crystallography.

van Thor JJ, Madsen A.

Struct Dyn. 2015 Jan 30;2(1):014102. doi: 10.1063/1.4906354.


Enzyme transient state kinetics in crystal and solution from the perspective of a time-resolved crystallographer.

Schmidt M, Saldin DK.

Struct Dyn. 2014 Mar 27;1(2):024701. doi: 10.1063/1.4869472.


Small fluorescence-activating and absorption-shifting tag for tunable protein imaging in vivo.

Plamont MA, Billon-Denis E, Maurin S, Gauron C, Pimenta FM, Specht CG, Shi J, Quérard J, Pan B, Rossignol J, Moncoq K, Morellet N, Volovitch M, Lescop E, Chen Y, Triller A, Vriz S, Le Saux T, Jullien L, Gautier A.

Proc Natl Acad Sci U S A. 2016 Jan 19;113(3):497-502. doi: 10.1073/pnas.1513094113. Erratum in: Proc Natl Acad Sci U S A. 2016 Mar 8;113(10):E1412. Moncoq, Karine [added].


Towards time-resolved serial crystallography in a microfluidic device.

Pawate AS, Šrajer V, Schieferstein J, Guha S, Henning R, Kosheleva I, Schmidt M, Ren Z, Kenis PJ, Perry SL.

Acta Crystallogr F Struct Biol Commun. 2015 Jul;71(Pt 7):823-30. doi: 10.1107/S2053230X15009061.


Origins of the Intermediate Spectral Form in M100 Mutants of Photoactive Yellow Protein.

Kumar A, Woolley GA.

Photochem Photobiol. 2015 Jul-Aug;91(4):985-91. doi: 10.1111/php.12464.


Conditionally and transiently disordered proteins: awakening cryptic disorder to regulate protein function.

Jakob U, Kriwacki R, Uversky VN.

Chem Rev. 2014 Jul 9;114(13):6779-805. doi: 10.1021/cr400459c. Review. No abstract available.


Structural and functional modularity of the orange carotenoid protein: distinct roles for the N- and C-terminal domains in cyanobacterial photoprotection.

Leverenz RL, Jallet D, Li MD, Mathies RA, Kirilovsky D, Kerfeld CA.

Plant Cell. 2014 Jan;26(1):426-37. doi: 10.1105/tpc.113.118588.


Strong ionic hydrogen bonding causes a spectral isotope effect in photoactive yellow protein.

Kaledhonkar S, Hara M, Stalcup TP, Xie A, Hoff WD.

Biophys J. 2013 Dec 3;105(11):2577-85. doi: 10.1016/j.bpj.2013.10.017.


Protein energy landscapes determined by five-dimensional crystallography.

Schmidt M, Srajer V, Henning R, Ihee H, Purwar N, Tenboer J, Tripathi S.

Acta Crystallogr D Biol Crystallogr. 2013 Dec;69(Pt 12):2534-42. doi: 10.1107/S0907444913025997.


Proton transfer reactions and hydrogen-bond networks in protein environments.

Ishikita H, Saito K.

J R Soc Interface. 2013 Nov 27;11(91):20130518. doi: 10.1098/rsif.2013.0518. Review.


Simulations of Two-dimensional Infrared and Stimulated Resonance Raman Spectra of Photoactive Yellow Protein.

Preketes NK, Biggs JD, Ren H, Andricioaei I, Mukamel S.

Chem Phys. 2013 Aug 1;422. doi: 10.1016/j.chemphys.2012.09.002.


Structural properties of PAS domains from the KCNH potassium channels.

Adaixo R, Harley CA, Castro-Rodrigues AF, Morais-Cabral JH.

PLoS One. 2013;8(3):e59265. doi: 10.1371/journal.pone.0059265.


A decade and a half of protein intrinsic disorder: biology still waits for physics.

Uversky VN.

Protein Sci. 2013 Jun;22(6):693-724. doi: 10.1002/pro.2261. Review.


Solution structure of the PAS domain of a thermophilic YybT protein homolog reveals a potential ligand-binding site.

Tan E, Rao F, Pasunooti S, Pham TH, Soehano I, Turner MS, Liew CW, Lescar J, Pervushin K, Liang ZX.

J Biol Chem. 2013 Apr 26;288(17):11949-59. doi: 10.1074/jbc.M112.437764.


Volume-conserving trans-cis isomerization pathways in photoactive yellow protein visualized by picosecond X-ray crystallography.

Jung YO, Lee JH, Kim J, Schmidt M, Moffat K, Srajer V, Ihee H.

Nat Chem. 2013 Mar;5(3):212-20. doi: 10.1038/nchem.1565.


On the Configurational and Conformational Changes in Photoactive Yellow Protein that Leads to Signal Generation in Ectothiorhodospira halophila.

Hellingwerf KJ, Hendriks J, Gensch T.

J Biol Phys. 2002 Sep;28(3):395-412. doi: 10.1023/A:1020360505111.


(1)H, (13)C, and (15)N resonance assignment of photoactive yellow protein.

Pool TJ, Oktaviani NA, Kamikubo H, Kataoka M, Mulder FA.

Biomol NMR Assign. 2013 Apr;7(1):97-100. doi: 10.1007/s12104-012-9387-9.

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