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Items: 1 to 20 of 52

1.

Diversity of Secondary Structure in Catalytic Peptides with β-Turn-Biased Sequences.

Metrano AJ, Abascal NC, Mercado BQ, Paulson EK, Hurtley AE, Miller SJ.

J Am Chem Soc. 2017 Jan 11;139(1):492-516. doi: 10.1021/jacs.6b11348. Epub 2016 Dec 28.

2.

Extension of the classical classification of β-turns.

de Brevern AG.

Sci Rep. 2016 Sep 15;6:33191. doi: 10.1038/srep33191.

3.

A novel hybrid method of beta-turn identification in protein using binary logistic regression and neural network.

Asghari MP, Hayatshahi SH, Abdolmaleki P.

EXCLI J. 2012 Jul 5;11:346-56. eCollection 2012.

4.

The Combining Sites of Anti-lipid A Antibodies Reveal a Widely Utilized Motif Specific for Negatively Charged Groups.

Haji-Ghassemi O, Müller-Loennies S, Rodriguez T, Brade L, Grimmecke HD, Brade H, Evans SV.

J Biol Chem. 2016 May 6;291(19):10104-18. doi: 10.1074/jbc.M115.712448. Epub 2016 Mar 1.

5.

Monitoring the heat-induced structural changes of alkaline phosphatase by molecular modeling, fluorescence spectroscopy and inactivation kinetics investigations.

Dumitrașcu L, Stănciuc N, Aprodu I, Ciuciu AM, Alexe P, Bahrim GE.

J Food Sci Technol. 2015 Oct;52(10):6290-300. doi: 10.1007/s13197-015-1719-1. Epub 2015 Jan 20.

6.

Arginine-, D-arginine-vasopressin, and their inverso analogues in micellar and liposomic models of cell membrane: CD, NMR, and molecular dynamics studies.

Lubecka EA, Sikorska E, Sobolewski D, Prahl A, Slaninová J, Ciarkowski J.

Eur Biophys J. 2015 Dec;44(8):727-43. doi: 10.1007/s00249-015-1071-4. Epub 2015 Aug 20.

7.

Structure-Based Design of Inhibitors of Protein-Protein Interactions: Mimicking Peptide Binding Epitopes.

Pelay-Gimeno M, Glas A, Koch O, Grossmann TN.

Angew Chem Int Ed Engl. 2015 Jul 27;54(31):8896-927. doi: 10.1002/anie.201412070. Epub 2015 Jun 26. Review.

8.

In silico conformational analysis of the short-sequence hypomurocin a peptides.

Násztor Z, Horváth J, Leitgeb B.

Int J Pept. 2015;2015:281065. doi: 10.1155/2015/281065. Epub 2015 Jan 28.

9.

Characterization of novel MSX1 mutations identified in Japanese patients with nonsyndromic tooth agenesis.

Yamaguchi S, Machida J, Kamamoto M, Kimura M, Shibata A, Tatematsu T, Miyachi H, Higashi Y, Jezewski P, Nakayama A, Shimozato K, Tokita Y.

PLoS One. 2014 Aug 7;9(8):e102944. doi: 10.1371/journal.pone.0102944. eCollection 2014.

10.

Solution structure of a sponge-derived cystine knot peptide and its notable stability.

Li H, Su M, Hamann MT, Bowling JJ, Kim HS, Jung JH.

J Nat Prod. 2014 Feb 28;77(2):304-10. doi: 10.1021/np400899a. Epub 2014 Feb 5.

11.

Dihedral-based segment identification and classification of biopolymers I: proteins.

Nagy G, Oostenbrink C.

J Chem Inf Model. 2014 Jan 27;54(1):266-77. doi: 10.1021/ci400541d. Epub 2014 Jan 10.

12.

Asteropsins B-D, sponge-derived knottins with potential utility as a novel scaffold for oral peptide drugs.

Li H, Bowling JJ, Su M, Hong J, Lee BJ, Hamann MT, Jung JH.

Biochim Biophys Acta. 2014 Mar;1840(3):977-84. doi: 10.1016/j.bbagen.2013.11.001. Epub 2013 Nov 10.

13.

Structural studies of N-terminal mutants of connexin 32 using (1)H NMR spectroscopy.

Kalmatsky BD, Batir Y, Bargiello TA, Dowd TL.

Arch Biochem Biophys. 2012 Oct 1;526(1):1-8. doi: 10.1016/j.abb.2012.05.027. Epub 2012 Jun 14.

14.

(φ,ψ)₂ motifs: a purely conformation-based fine-grained enumeration of protein parts at the two-residue level.

Hollingsworth SA, Lewis MC, Berkholz DS, Wong WK, Karplus PA.

J Mol Biol. 2012 Feb 10;416(1):78-93. doi: 10.1016/j.jmb.2011.12.022. Epub 2011 Dec 16.

15.

Microsecond molecular dynamics simulations of intrinsically disordered proteins involved in the oxidative stress response.

Cino EA, Wong-ekkabut J, Karttunen M, Choy WY.

PLoS One. 2011;6(11):e27371. doi: 10.1371/journal.pone.0027371. Epub 2011 Nov 18.

16.

Dissecting protein loops with a statistical scalpel suggests a functional implication of some structural motifs.

Regad L, Martin J, Camproux AC.

BMC Bioinformatics. 2011 Jun 20;12:247. doi: 10.1186/1471-2105-12-247.

17.
18.

Two pentadehydropeptides with different configurations of the DeltaPhe residues.

Makowski M, Lisowski M, Maciag A, Wiktor M, Szlachcic A, Lis T.

Acta Crystallogr C. 2010 Mar;66(Pt 3):o119-23. doi: 10.1107/S0108270110003094. Epub 2010 Feb 3.

19.

Mining protein loops using a structural alphabet and statistical exceptionality.

Regad L, Martin J, Nuel G, Camproux AC.

BMC Bioinformatics. 2010 Feb 4;11:75. doi: 10.1186/1471-2105-11-75.

20.

Structural studies of the N-terminus of Connexin 32 using 1H NMR spectroscopy.

Kalmatsky BD, Bhagan S, Tang Q, Bargiello TA, Dowd TL.

Arch Biochem Biophys. 2009 Oct 1;490(1):9-16. doi: 10.1016/j.abb.2009.07.015. Epub 2009 Jul 26.

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