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Items: 7


Practical considerations on performing and analyzing CLIP-seq experiments to identify transcriptomic-wide RNA-protein interactions.

Chen X, Castro SA, Liu Q, Hu W, Zhang S.

Methods. 2019 Feb 15;155:49-57. doi: 10.1016/j.ymeth.2018.12.002. Epub 2018 Dec 6. Review.


CLIPick: a sensitive peak caller for expression-based deconvolution of HITS-CLIP signals.

Park S, Ahn SH, Cho ES, Cho YK, Jang ES, Chi SW.

Nucleic Acids Res. 2018 Nov 30;46(21):11153-11168. doi: 10.1093/nar/gky917.


The Nefarious Nexus of Noncoding RNAs in Cancer.

Anastasiadou E, Faggioni A, Trivedi P, Slack FJ.

Int J Mol Sci. 2018 Jul 17;19(7). pii: E2072. doi: 10.3390/ijms19072072. Review.


uvCLAP is a fast and non-radioactive method to identify in vivo targets of RNA-binding proteins.

Maticzka D, Ilik IA, Aktas T, Backofen R, Akhtar A.

Nat Commun. 2018 Mar 20;9(1):1142. doi: 10.1038/s41467-018-03575-4.


Post-transcriptional gene silencing mediated by microRNAs is controlled by nucleoplasmic Sfpq.

Bottini S, Hamouda-Tekaya N, Mategot R, Zaragosi LE, Audebert S, Pisano S, Grandjean V, Mauduit C, Benahmed M, Barbry P, Repetto E, Trabucchi M.

Nat Commun. 2017 Oct 30;8(1):1189. doi: 10.1038/s41467-017-01126-x.


Re-evaluating Strategies to Define the Immunoregulatory Roles of miRNAs.

Forero A, So L, Savan R.

Trends Immunol. 2017 Aug;38(8):558-566. doi: 10.1016/ Epub 2017 Jun 27. Review.


Recent computational developments on CLIP-seq data analysis and microRNA targeting implications.

Bottini S, Pratella D, Grandjean V, Repetto E, Trabucchi M.

Brief Bioinform. 2018 Nov 27;19(6):1290-1301. doi: 10.1093/bib/bbx063.

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