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Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification.

Yuenyong W, Chinpongpanich A, Comai L, Chadchawan S, Buaboocha T.

BMC Plant Biol. 2018 Dec 5;18(1):335. doi: 10.1186/s12870-018-1538-4.


The Monothiol Glutaredoxin Grx4 Regulates Iron Homeostasis and Virulence in Cryptococcus neoformans.

Attarian R, Hu G, Sánchez-León E, Caza M, Croll D, Do E, Bach H, Missall T, Lodge J, Jung WH, Kronstad JW.

MBio. 2018 Dec 4;9(6). pii: e02377-18. doi: 10.1128/mBio.02377-18.


SeqVItA: Sequence Variant Identification and Annotation Platform for Next Generation Sequencing Data.

Dharanipragada P, Seelam SR, Parekh N.

Front Genet. 2018 Nov 14;9:537. doi: 10.3389/fgene.2018.00537. eCollection 2018.


Immunotherapy utilizing the combination of natural killer- and antibody dependent cellular cytotoxicity (ADCC)-mediating agents with poly (ADP-ribose) polymerase (PARP) inhibition.

Fenerty KE, Padget M, Wolfson B, Gameiro SR, Su Z, Lee JH, Rabizadeh S, Soon-Shiong P, Hodge JW.

J Immunother Cancer. 2018 Nov 29;6(1):133. doi: 10.1186/s40425-018-0445-4.


Computational Modeling and Reverse Engineering to Reveal Dominant Regulatory Interactions Controlling Osteochondral Differentiation: Potential for Regenerative Medicine.

Lesage R, Kerkhofs J, Geris L.

Front Bioeng Biotechnol. 2018 Nov 13;6:165. doi: 10.3389/fbioe.2018.00165. eCollection 2018. Review.


Weighted Gene Correlation Network Analysis (WGCNA) Reveals Novel Transcription Factors Associated With Bisphenol A Dose-Response.

Maertens A, Tran V, Kleensang A, Hartung T.

Front Genet. 2018 Nov 12;9:508. doi: 10.3389/fgene.2018.00508. eCollection 2018.


Histology-guided high-resolution AP-SMALDI mass spectrometry imaging of wheat-Fusarium graminearum interaction at the root-shoot junction.

Bhandari DR, Wang Q, Li B, Friedt W, Römpp A, Spengler B, Gottwald S.

Plant Methods. 2018 Nov 17;14:103. doi: 10.1186/s13007-018-0368-6. eCollection 2018.


Network Pharmacology to Unveil the Biological Basis of Health-Strengthening Herbal Medicine in Cancer Treatment.

Zheng J, Wu M, Wang H, Li S, Wang X, Li Y, Wang D, Li S.

Cancers (Basel). 2018 Nov 21;10(11). pii: E461. doi: 10.3390/cancers10110461.


Human Prolactinoma: A View of Protein-Protein Interaction Pattern.

Zamanian Azodi M, Rezaei-Tavirani M, Rostami Nejad M, Rezaei-Tavirani M.

Int J Endocrinol Metab. 2018 Aug 6;16(4):e67332. doi: 10.5812/ijem.67332. eCollection 2018 Oct.


Coordinate regulation of long non-coding RNAs and protein-coding genes in germ-free mice.

Dempsey J, Zhang A, Cui JY.

BMC Genomics. 2018 Nov 21;19(1):834. doi: 10.1186/s12864-018-5235-3.


ProSave: an application for restoring quantitative data to manipulated subsets of protein lists.

Machlab DA, Velez G, Bassuk AG, Mahajan VB.

Source Code Biol Med. 2018 Nov 12;13:3. doi: 10.1186/s13029-018-0070-0. eCollection 2018.


Eco-Metabolomics and Metabolic Modeling: Making the Leap From Model Systems in the Lab to Native Populations in the Field.

Nagler M, Nägele T, Gilli C, Fragner L, Korte A, Platzer A, Farlow A, Nordborg M, Weckwerth W.

Front Plant Sci. 2018 Nov 6;9:1556. doi: 10.3389/fpls.2018.01556. eCollection 2018.


Quantitative metaproteomics of medieval dental calculus reveals individual oral health status.

Jersie-Christensen RR, Lanigan LT, Lyon D, Mackie M, Belstrøm D, Kelstrup CD, Fotakis AK, Willerslev E, Lynnerup N, Jensen LJ, Cappellini E, Olsen JV.

Nat Commun. 2018 Nov 20;9(1):4744. doi: 10.1038/s41467-018-07148-3.


Ambiguity in logic-based models of gene regulatory networks: An integrative multi-perturbation analysis.

Alizad-Rahvar AR, Sadeghi M.

PLoS One. 2018 Nov 20;13(11):e0206976. doi: 10.1371/journal.pone.0206976. eCollection 2018.


Transcriptome and Proteome of Fish-Pathogenic Streptococcus agalactiae Are Modulated by Temperature.

Tavares GC, Carvalho AF, Pereira FL, Rezende CP, Azevedo VAC, Leal CAG, Figueiredo HCP.

Front Microbiol. 2018 Nov 2;9:2639. doi: 10.3389/fmicb.2018.02639. eCollection 2018.


C/VDdb: A multi-omics expression profiling database for a knowledge-driven approach in cardiovascular disease (CVD).

Fernandes M, Patel A, Husi H.

PLoS One. 2018 Nov 12;13(11):e0207371. doi: 10.1371/journal.pone.0207371. eCollection 2018.


Prognostic Value of Excision Repair Cross-Complementing mRNA Expression in Gastric Cancer.

Luo SS, Liao XW, Zhu XD.

Biomed Res Int. 2018 Oct 17;2018:6204684. doi: 10.1155/2018/6204684. eCollection 2018.


Single cell transcriptome analysis of human, marmoset and mouse embryos reveals common and divergent features of preimplantation development.

Boroviak T, Stirparo GG, Dietmann S, Hernando-Herraez I, Mohammed H, Reik W, Smith A, Sasaki E, Nichols J, Bertone P.

Development. 2018 Nov 9;145(21). pii: dev167833. doi: 10.1242/dev.167833.


Proteomic Profiling of Burkholderia thailandensis During Host Infection Using Bio-Orthogonal Noncanonical Amino Acid Tagging (BONCAT).

Franco M, D'haeseleer PM, Branda SS, Liou MJ, Haider Y, Segelke BW, El-Etr SH.

Front Cell Infect Microbiol. 2018 Oct 23;8:370. doi: 10.3389/fcimb.2018.00370. eCollection 2018.


Genome-wide CRISPR-dCas9 screens in E. coli identify essential genes and phage host factors.

Rousset F, Cui L, Siouve E, Becavin C, Depardieu F, Bikard D.

PLoS Genet. 2018 Nov 7;14(11):e1007749. doi: 10.1371/journal.pgen.1007749. eCollection 2018 Nov.

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