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Items: 15

1.

Amplified Host Defense by Toll-Like Receptor-Mediated Downregulation of the Glucocorticoid-Induced Leucine Zipper (GILZ) in Macrophages.

Hoppstädter J, Diesel B, Linnenberger R, Hachenthal N, Flamini S, Minet M, Leidinger P, Backes C, Grässer F, Meese E, Bruscoli S, Riccardi C, Huwer H, Kiemer AK.

Front Immunol. 2019 Jan 22;9:3111. doi: 10.3389/fimmu.2018.03111. eCollection 2018.

2.

TransmiR v2.0: an updated transcription factor-microRNA regulation database.

Tong Z, Cui Q, Wang J, Zhou Y.

Nucleic Acids Res. 2019 Jan 8;47(D1):D253-D258. doi: 10.1093/nar/gky1023.

3.

Integrated Characterization of MicroRNA and mRNA Transcriptome in Papillary Thyroid Carcinoma.

Mohamad Yusof A, Jamal R, Muhammad R, Abdullah Suhaimi SN, Mohamed Rose I, Saidin S, Ab Mutalib NS.

Front Endocrinol (Lausanne). 2018 Apr 16;9:158. doi: 10.3389/fendo.2018.00158. eCollection 2018.

4.

Roles of NF-κB Signaling in the Regulation of miRNAs Impacting on Inflammation in Cancer.

Markopoulos GS, Roupakia E, Tokamani M, Alabasi G, Sandaltzopoulos R, Marcu KB, Kolettas E.

Biomedicines. 2018 Mar 30;6(2). pii: E40. doi: 10.3390/biomedicines6020040. Review.

5.

mirTrans: a resource of transcriptional regulation on microRNAs for human cell lines.

Hua X, Tang R, Xu X, Wang Z, Xu Q, Chen L, Wingender E, Li J, Zhang C, Wang J.

Nucleic Acids Res. 2018 Jan 4;46(D1):D168-D174. doi: 10.1093/nar/gkx996.

6.

An integrated expression atlas of miRNAs and their promoters in human and mouse.

de Rie D, Abugessaisa I, Alam T, Arner E, Arner P, Ashoor H, Åström G, Babina M, Bertin N, Burroughs AM, Carlisle AJ, Daub CO, Detmar M, Deviatiiarov R, Fort A, Gebhard C, Goldowitz D, Guhl S, Ha TJ, Harshbarger J, Hasegawa A, Hashimoto K, Herlyn M, Heutink P, Hitchens KJ, Hon CC, Huang E, Ishizu Y, Kai C, Kasukawa T, Klinken P, Lassmann T, Lecellier CH, Lee W, Lizio M, Makeev V, Mathelier A, Medvedeva YA, Mejhert N, Mungall CJ, Noma S, Ohshima M, Okada-Hatakeyama M, Persson H, Rizzu P, Roudnicky F, Sætrom P, Sato H, Severin J, Shin JW, Swoboda RK, Tarui H, Toyoda H, Vitting-Seerup K, Winteringham L, Yamaguchi Y, Yasuzawa K, Yoneda M, Yumoto N, Zabierowski S, Zhang PG, Wells CA, Summers KM, Kawaji H, Sandelin A, Rehli M; FANTOM Consortium, Hayashizaki Y, Carninci P, Forrest ARR, de Hoon MJL.

Nat Biotechnol. 2017 Sep;35(9):872-878. doi: 10.1038/nbt.3947. Epub 2017 Aug 21.

7.

JMJD1C Ensures Mouse Embryonic Stem Cell Self-Renewal and Somatic Cell Reprogramming through Controlling MicroRNA Expression.

Xiao F, Liao B, Hu J, Li S, Zhao H, Sun M, Gu J, Jin Y.

Stem Cell Reports. 2017 Sep 12;9(3):927-942. doi: 10.1016/j.stemcr.2017.07.013. Epub 2017 Aug 17.

8.

Methods of MicroRNA Promoter Prediction and Transcription Factor Mediated Regulatory Network.

Zhao Y, Wang F, Chen S, Wan J, Wang G.

Biomed Res Int. 2017;2017:7049406. doi: 10.1155/2017/7049406. Epub 2017 Jun 5. Review.

9.

BioM2MetDisease: a manually curated database for associations between microRNAs, metabolites, small molecules and metabolic diseases.

Xu Y, Yang H, Wu T, Dong Q, Sun Z, Shang D, Li F, Xu Y, Su F, Liu S, Zhang Y, Li X.

Database (Oxford). 2017 Jan 1;2017. doi: 10.1093/database/bax037.

10.

Systems biology study of transcriptional and post-transcriptional co-regulatory network sheds light on key regulators involved in important biological processes in Citrus sinensis.

Khodadadi E, Mehrabi AA, Najafi A, Rastad S, Masoudi-Nejad A.

Physiol Mol Biol Plants. 2017 Apr;23(2):331-342. doi: 10.1007/s12298-017-0416-0. Epub 2017 Feb 10.

11.

MYCbase: a database of functional sites and biochemical properties of Myc in both normal and cancer cells.

Chakravorty D, Jana T, Das Mandal S, Seth A, Bhattacharya A, Saha S.

BMC Bioinformatics. 2017 Apr 28;18(1):224. doi: 10.1186/s12859-017-1652-6.

12.

The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes.

Galperin MY, Fernández-Suárez XM, Rigden DJ.

Nucleic Acids Res. 2017 Jan 4;45(D1):D1-D11. doi: 10.1093/nar/gkw1188. Erratum in: Nucleic Acids Res. 2017 May 19;45(9):5627.

13.

DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data.

Vlachos IS, Vergoulis T, Paraskevopoulou MD, Lykokanellos F, Georgakilas G, Georgiou P, Chatzopoulos S, Karagkouni D, Christodoulou F, Dalamagas T, Hatzigeorgiou AG.

Nucleic Acids Res. 2016 Jul 8;44(W1):W128-34. doi: 10.1093/nar/gkw455. Epub 2016 May 20.

14.

Infinity: An In-Silico Tool for Genome-Wide Prediction of Specific DNA Matrices in miRNA Genomic Loci.

Falcone E, Grandoni L, Garibaldi F, Manni I, Filligoi G, Piaggio G, Gurtner A.

PLoS One. 2016 Apr 15;11(4):e0153658. doi: 10.1371/journal.pone.0153658. eCollection 2016.

15.

Systems psychopharmacology: A network approach to developing novel therapies.

Gebicke-Haerter PJ.

World J Psychiatry. 2016 Mar 22;6(1):66-83. doi: 10.5498/wjp.v6.i1.66. eCollection 2016 Mar 22. Review.

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