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Items: 1 to 20 of 36


Identification of Populus Small RNAs Responsive to Mutualistic Interactions With Mycorrhizal Fungi, Laccaria bicolor and Rhizophagus irregularis.

Mewalal R, Yin H, Hu R, Jawdy S, Vion P, Tuskan GA, Le Tacon F, Labbé JL, Yang X.

Front Microbiol. 2019 Mar 18;10:515. doi: 10.3389/fmicb.2019.00515. eCollection 2019.


Infrastructures of systems biology that facilitate functional genomic study in rice.

Hong WJ, Kim YJ, Chandran AKN, Jung KH.

Rice (N Y). 2019 Mar 14;12(1):15. doi: 10.1186/s12284-019-0276-z. Review.


Intrusive Growth of Phloem Fibers in Flax Stem: Integrated Analysis of miRNA and mRNA Expression Profiles.

Gorshkov O, Chernova T, Mokshina N, Gogoleva N, Suslov D, Tkachenko A, Gorshkova T.

Plants (Basel). 2019 Feb 19;8(2). pii: E47. doi: 10.3390/plants8020047.


Enhanced resistance to bacterial and oomycete pathogens by short tandem target mimic RNAs in tomato.

Canto-Pastor A, Santos BAMC, Valli AA, Summers W, Schornack S, Baulcombe DC.

Proc Natl Acad Sci U S A. 2019 Feb 12;116(7):2755-2760. doi: 10.1073/pnas.1814380116. Epub 2019 Jan 24.


The Role of UV-B light on Small RNA Activity During Grapevine Berry Development.

Sunitha S, Loyola R, Alcalde JA, Arce-Johnson P, Matus JT, Rock CD.

G3 (Bethesda). 2019 Mar 7;9(3):769-787. doi: 10.1534/g3.118.200805.


Plant stress RNA-seq Nexus: a stress-specific transcriptome database in plant cells.

Li JR, Liu CC, Sun CH, Chen YT.

BMC Genomics. 2018 Dec 27;19(1):966. doi: 10.1186/s12864-018-5367-5.


miRNomes involved in imparting thermotolerance to crop plants.

Gahlaut V, Baranwal VK, Khurana P.

3 Biotech. 2018 Dec;8(12):497. doi: 10.1007/s13205-018-1521-7. Epub 2018 Nov 24. Review.


Uncovering full-length transcript isoforms of sugarcane cultivar Khon Kaen 3 using single-molecule long-read sequencing.

Piriyapongsa J, Kaewprommal P, Vaiwsri S, Anuntakarun S, Wirojsirasak W, Punpee P, Klomsa-Ard P, Shaw PJ, Pootakham W, Yoocha T, Sangsrakru D, Tangphatsornruang S, Tongsima S, Tragoonrung S.

PeerJ. 2018 Oct 30;6:e5818. doi: 10.7717/peerj.5818. eCollection 2018.


A comprehensive review of web-based resources of non-coding RNAs for plant science research.

Liao P, Li S, Cui X, Zheng Y.

Int J Biol Sci. 2018 May 22;14(8):819-832. doi: 10.7150/ijbs.24593. eCollection 2018. Review.


Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing.

Zuo C, Blow M, Sreedasyam A, Kuo RC, Ramamoorthy GK, Torres-Jerez I, Li G, Wang M, Dilworth D, Barry K, Udvardi M, Schmutz J, Tang Y, Xu Y.

Biotechnol Biofuels. 2018 Jun 20;11:170. doi: 10.1186/s13068-018-1167-z. eCollection 2018.


Prediction of plant lncRNA by ensemble machine learning classifiers.

Simopoulos CMA, Weretilnyk EA, Golding GB.

BMC Genomics. 2018 May 2;19(1):316. doi: 10.1186/s12864-018-4665-2.


Present Scenario of Long Non-Coding RNAs in Plants.

Bhatia G, Goyal N, Sharma S, Upadhyay SK, Singh K.

Noncoding RNA. 2017 Mar 24;3(2). pii: E16. doi: 10.3390/ncrna3020016.


Exocyst Subunit EXO70H4 Has a Specific Role in Callose Synthase Secretion and Silica Accumulation.

Kulich I, Vojtíková Z, Sabol P, Ortmannová J, Neděla V, Tihlaříková E, Žárský V.

Plant Physiol. 2018 Mar;176(3):2040-2051. doi: 10.1104/pp.17.01693. Epub 2018 Jan 4.


PLncPRO for prediction of long non-coding RNAs (lncRNAs) in plants and its application for discovery of abiotic stress-responsive lncRNAs in rice and chickpea.

Singh U, Khemka N, Rajkumar MS, Garg R, Jain M.

Nucleic Acids Res. 2017 Dec 15;45(22):e183. doi: 10.1093/nar/gkx866.


Non-coding RNAs and Their Roles in Stress Response in Plants.

Wang J, Meng X, Dobrovolskaya OB, Orlov YL, Chen M.

Genomics Proteomics Bioinformatics. 2017 Oct;15(5):301-312. doi: 10.1016/j.gpb.2017.01.007. Epub 2017 Oct 7. Review.


EVLncRNAs: a manually curated database for long non-coding RNAs validated by low-throughput experiments.

Zhou B, Zhao H, Yu J, Guo C, Dou X, Song F, Hu G, Cao Z, Qu Y, Yang Y, Zhou Y, Wang J.

Nucleic Acids Res. 2018 Jan 4;46(D1):D100-D105. doi: 10.1093/nar/gkx677.


Comparative analysis of miRNAs of two rapeseed genotypes in response to acetohydroxyacid synthase-inhibiting herbicides by high-throughput sequencing.

Hu M, Pu H, Gao J, Long W, Chen F, Zhang W, Zhou X, Peng Q, Chen S, Zhang J.

PLoS One. 2017 Sep 26;12(9):e0184917. doi: 10.1371/journal.pone.0184917. eCollection 2017.


Transcriptome analysis of Callery pear (Pyrus calleryana) reveals a comprehensive signalling network in response to Alternaria alternata.

Kan J, Liu T, Ma N, Li H, Li X, Wang J, Zhang B, Chang Y, Lin J.

PLoS One. 2017 Sep 21;12(9):e0184988. doi: 10.1371/journal.pone.0184988. eCollection 2017.


Bioinformatics resources for deciphering the biogenesis and action pathways of plant small RNAs.

Yu D, Ma X, Zuo Z, Shao W, Wang H, Meng Y.

Rice (N Y). 2017 Dec;10(1):38. doi: 10.1186/s12284-017-0177-y. Epub 2017 Aug 7. Review.


Global gene expression defines faded whorl specification of double flower domestication in Camellia.

Li X, Li J, Fan Z, Liu Z, Tanaka T, Yin H.

Sci Rep. 2017 Jun 9;7(1):3197. doi: 10.1038/s41598-017-03575-2.

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