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Items: 1 to 20 of 23

1.

Plant IsomiR Atlas: Large Scale Detection, Profiling, and Target Repertoire of IsomiRs in Plants.

Yang K, Wen X, Mudunuri SB, Sablok G.

Front Plant Sci. 2019 Jan 22;9:1881. doi: 10.3389/fpls.2018.01881. eCollection 2018.

2.

Diff isomiRs: Large-scale detection of differential isomiRs for understanding non-coding regulated stress omics in plants.

Yang K, Wen X, Mudunuri S, Varma GPS, Sablok G.

Sci Rep. 2019 Feb 5;9(1):1406. doi: 10.1038/s41598-019-38932-w.

3.

An integrative piRNA analysis of mouse gametes and zygotes reveals new potential origins and gene regulatory roles.

Larriba E, Del Mazo J.

Sci Rep. 2018 Aug 27;8(1):12832. doi: 10.1038/s41598-018-31032-1.

4.

Identifying and characterizing functional 3' nucleotide addition in the miRNA pathway.

Burroughs AM, Ando Y.

Methods. 2019 Jan 1;152:23-30. doi: 10.1016/j.ymeth.2018.08.006. Epub 2018 Aug 20. Review.

5.

Endogenous transcripts control miRNA levels and activity in mammalian cells by target-directed miRNA degradation.

Ghini F, Rubolino C, Climent M, Simeone I, Marzi MJ, Nicassio F.

Nat Commun. 2018 Aug 7;9(1):3119. doi: 10.1038/s41467-018-05182-9.

6.

3' RNA Uridylation in Epitranscriptomics, Gene Regulation, and Disease.

Menezes MR, Balzeau J, Hagan JP.

Front Mol Biosci. 2018 Jul 13;5:61. doi: 10.3389/fmolb.2018.00061. eCollection 2018. Review.

7.

A Comprehensive Approach to Sequence-oriented IsomiR annotation (CASMIR): demonstration with IsomiR profiling in colorectal neoplasia.

Wu CW, Evans JM, Huang S, Mahoney DW, Dukek BA, Taylor WR, Yab TC, Smyrk TC, Jen J, Kisiel JB, Ahlquist DA.

BMC Genomics. 2018 May 25;19(1):401. doi: 10.1186/s12864-018-4794-7.

8.

Mapping the microRNA Expression Profiles in Glyoxalase Over-expressing Salinity Tolerant Rice.

Tripathi A, Chacon O, Singla-Pareek SL, Sopory SK, Sanan-Mishra N.

Curr Genomics. 2018 Jan;19(1):21-35. doi: 10.2174/1389202918666170228134530.

9.

Evaluation of high-throughput isomiR identification tools: illuminating the early isomiRome of Tribolium castaneum.

Amsel D, Vilcinskas A, Billion A.

BMC Bioinformatics. 2017 Aug 3;18(1):359. doi: 10.1186/s12859-017-1772-z.

10.
11.

Serum microRNA signatures as "liquid biopsies" for interrogating hepatotoxic mechanisms and liver pathogenesis in human.

Krauskopf J, de Kok TM, Schomaker SJ, Gosink M, Burt DA, Chandler P, Warner RL, Johnson KJ, Caiment F, Kleinjans JC, Aubrecht J.

PLoS One. 2017 May 17;12(5):e0177928. doi: 10.1371/journal.pone.0177928. eCollection 2017.

12.

MicroRNA-independent functions of DGCR8 are essential for neocortical development and TBR1 expression.

Marinaro F, Marzi MJ, Hoffmann N, Amin H, Pelizzoli R, Niola F, Nicassio F, De Pietri Tonelli D.

EMBO Rep. 2017 Apr;18(4):603-618. doi: 10.15252/embr.201642800. Epub 2017 Feb 23.

13.

DeAnnIso: a tool for online detection and annotation of isomiRs from small RNA sequencing data.

Zhang Y, Zang Q, Zhang H, Ban R, Yang Y, Iqbal F, Li A, Shi Q.

Nucleic Acids Res. 2016 Jul 8;44(W1):W166-75. doi: 10.1093/nar/gkw427. Epub 2016 May 13.

14.

miR-isomiRExp: a web-server for the analysis of expression of miRNA at the miRNA/isomiR levels.

Guo L, Yu J, Liang T, Zou Q.

Sci Rep. 2016 Mar 24;6:23700. doi: 10.1038/srep23700.

15.

Degradation dynamics of microRNAs revealed by a novel pulse-chase approach.

Marzi MJ, Ghini F, Cerruti B, de Pretis S, Bonetti P, Giacomelli C, Gorski MM, Kress T, Pelizzola M, Muller H, Amati B, Nicassio F.

Genome Res. 2016 Apr;26(4):554-65. doi: 10.1101/gr.198788.115. Epub 2016 Jan 28.

16.

miRMOD: a tool for identification and analysis of 5' and 3' miRNA modifications in Next Generation Sequencing small RNA data.

Kaushik A, Saraf S, Mukherjee SK, Gupta D.

PeerJ. 2015 Oct 20;3:e1332. doi: 10.7717/peerj.1332. eCollection 2015.

17.

isomiRs: Increasing Evidences of isomiRs Complexity in Plant Stress Functional Biology.

Sablok G, Srivastva AK, Suprasanna P, Baev V, Ralph PJ.

Front Plant Sci. 2015 Nov 10;6:949. doi: 10.3389/fpls.2015.00949. eCollection 2015. No abstract available.

18.

Editorial: Bioinformatics of Non-Coding RNAs with Applications to Biomedicine: Recent Advances and Open Challenges.

Laganà A, Ferro A, Croce CM.

Front Bioeng Biotechnol. 2015 Oct 8;3:156. doi: 10.3389/fbioe.2015.00156. eCollection 2015. No abstract available.

19.

New global analysis of the microRNA transcriptome of primary tumors and lymph node metastases of papillary thyroid cancer.

Saiselet M, Gacquer D, Spinette A, Craciun L, Decaussin-Petrucci M, Andry G, Detours V, Maenhaut C.

BMC Genomics. 2015 Oct 21;16:828. doi: 10.1186/s12864-015-2082-3.

20.

A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome.

Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ.

Annu Rev Genet. 2015;49:213-42. doi: 10.1146/annurev-genet-120213-092023. Epub 2015 Oct 14. Review.

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