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Items: 17

1.

In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant.

Silvestri A, Fiorilli V, Miozzi L, Accotto GP, Turina M, Lanfranco L.

BMC Genomics. 2019 Mar 4;20(1):169. doi: 10.1186/s12864-019-5561-0.

2.

miRNomes involved in imparting thermotolerance to crop plants.

Gahlaut V, Baranwal VK, Khurana P.

3 Biotech. 2018 Dec;8(12):497. doi: 10.1007/s13205-018-1521-7. Epub 2018 Nov 24. Review.

PMID:
30498670
3.

PAREsnip2: a tool for high-throughput prediction of small RNA targets from degradome sequencing data using configurable targeting rules.

Thody J, Folkes L, Medina-Calzada Z, Xu P, Dalmay T, Moulton V.

Nucleic Acids Res. 2018 Sep 28;46(17):8730-8739. doi: 10.1093/nar/gky609.

4.

Plant 24-nt reproductive phasiRNAs from intramolecular duplex mRNAs in diverse monocots.

Kakrana A, Mathioni SM, Huang K, Hammond R, Vandivier L, Patel P, Arikit S, Shevchenko O, Harkess AE, Kingham B, Gregory BD, Leebens-Mack JH, Meyers BC.

Genome Res. 2018 Sep;28(9):1333-1344. doi: 10.1101/gr.228163.117. Epub 2018 Jul 12.

5.

Unravelling miRNA regulation in yield of rice (Oryza sativa) based on differential network model.

Hu J, Zeng T, Xia Q, Qian Q, Yang C, Ding Y, Chen L, Wang W.

Sci Rep. 2018 May 31;8(1):8498. doi: 10.1038/s41598-018-26438-w.

6.

TarHunter, a tool for predicting conserved microRNA targets and target mimics in plants.

Ma X, Liu C, Gu L, Mo B, Cao X, Chen X.

Bioinformatics. 2018 May 1;34(9):1574-1576. doi: 10.1093/bioinformatics/btx797.

7.

Long noncoding RNAs in the model species Brachypodium distachyon.

Quattro C, Enrico Pè M, Bertolini E.

Sci Rep. 2017 Sep 12;7(1):11252. doi: 10.1038/s41598-017-11206-z.

8.

Bioinformatics resources for deciphering the biogenesis and action pathways of plant small RNAs.

Yu D, Ma X, Zuo Z, Shao W, Wang H, Meng Y.

Rice (N Y). 2017 Dec;10(1):38. doi: 10.1186/s12284-017-0177-y. Epub 2017 Aug 7. Review.

9.

Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce.

Reyes-Chin-Wo S, Wang Z, Yang X, Kozik A, Arikit S, Song C, Xia L, Froenicke L, Lavelle DO, Truco MJ, Xia R, Zhu S, Xu C, Xu H, Xu X, Cox K, Korf I, Meyers BC, Michelmore RW.

Nat Commun. 2017 Apr 12;8:14953. doi: 10.1038/ncomms14953.

10.

The Influence of Genotype and Environment on Small RNA Profiles in Grapevine Berry.

Paim Pinto DL, Brancadoro L, Dal Santo S, De Lorenzis G, Pezzotti M, Meyers BC, Pè ME, Mica E.

Front Plant Sci. 2016 Oct 5;7:1459. eCollection 2016.

11.

Post-transcriptional modulation of protein phosphatase PPP2CA and tumor suppressor PTEN by endogenous siRNA cleaved from hairpin within PTEN mRNA 3'UTR in human liver cells.

Gao YE, Wang Y, Chen FQ, Feng JY, Yang G, Feng GX, Yang Z, Ye LH, Zhang XD.

Acta Pharmacol Sin. 2016 Jul;37(7):898-907. doi: 10.1038/aps.2016.18. Epub 2016 May 2.

12.

A structural view of microRNA-target recognition.

Leoni G, Tramontano A.

Nucleic Acids Res. 2016 May 19;44(9):e82. doi: 10.1093/nar/gkw043. Epub 2016 Jan 28.

13.

MicroRNA Maturation and MicroRNA Target Gene Expression Regulation Are Severely Disrupted in Soybean dicer-like1 Double Mutants.

Curtin SJ, Michno JM, Campbell BW, Gil-Humanes J, Mathioni SM, Hammond R, Gutierrez-Gonzalez JJ, Donohue RC, Kantar MB, Eamens AL, Meyers BC, Voytas DF, Stupar RM.

G3 (Bethesda). 2015 Dec 17;6(2):423-33. doi: 10.1534/g3.115.022137.

14.

StarScan: a web server for scanning small RNA targets from degradome sequencing data.

Liu S, Li JH, Wu J, Zhou KR, Zhou H, Yang JH, Qu LH.

Nucleic Acids Res. 2015 Jul 1;43(W1):W480-6. doi: 10.1093/nar/gkv524. Epub 2015 May 18.

15.

A dynamic evolutionary and functional landscape of plant phased small interfering RNAs.

Zheng Y, Wang Y, Wu J, Ding B, Fei Z.

BMC Biol. 2015 May 16;13:32. doi: 10.1186/s12915-015-0142-4.

16.

An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes.

Arikit S, Xia R, Kakrana A, Huang K, Zhai J, Yan Z, Valdés-López O, Prince S, Musket TA, Nguyen HT, Stacey G, Meyers BC.

Plant Cell. 2014 Dec;26(12):4584-601. doi: 10.1105/tpc.114.131847. Epub 2014 Dec 2.

17.

The dicer-like1 homolog fuzzy tassel is required for the regulation of meristem determinacy in the inflorescence and vegetative growth in maize.

Thompson BE, Basham C, Hammond R, Ding Q, Kakrana A, Lee TF, Simon SA, Meeley R, Meyers BC, Hake S.

Plant Cell. 2014 Dec;26(12):4702-17. doi: 10.1105/tpc.114.132670. Epub 2014 Dec 2.

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