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Items: 20

1.

PmiRDiscVali: an integrated pipeline for plant microRNA discovery and validation.

Yu D, Wan Y, Ito H, Ma X, Xie T, Wang T, Shao C, Meng Y.

BMC Genomics. 2019 Feb 13;20(1):133. doi: 10.1186/s12864-019-5478-7.

2.

Transcriptional and Small RNA Responses of the White Mold Fungus Sclerotinia sclerotiorum to Infection by a Virulence-Attenuating Hypovirus.

Lee Marzano SY, Neupane A, Domier L.

Viruses. 2018 Dec 14;10(12). pii: E713. doi: 10.3390/v10120713.

3.

miRNomes involved in imparting thermotolerance to crop plants.

Gahlaut V, Baranwal VK, Khurana P.

3 Biotech. 2018 Dec;8(12):497. doi: 10.1007/s13205-018-1521-7. Epub 2018 Nov 24. Review.

PMID:
30498670
4.

A Bioinformatics Pipeline for the Analysis and Target Prediction of RNA Effectors in Bidirectional Communication During Plant-Microbe Interactions.

Zanini S, Šečić E, Jelonek L, Kogel KH.

Front Plant Sci. 2018 Aug 20;9:1212. doi: 10.3389/fpls.2018.01212. eCollection 2018.

5.

Deciphering microRNAs and Their Associated Hairpin Precursors in a Non-Model Plant, Abelmoschus esculentus.

Velayudha Vimala Kumar K, Srikakulam N, Padbhanabhan P, Pandi G.

Noncoding RNA. 2017 Mar 31;3(2). pii: E19. doi: 10.3390/ncrna3020019.

6.

Salicylic Acid Perturbs sRNA-Gibberellin Regulatory Network in Immune Response of Potato to Potato virus Y Infection.

Križnik M, Petek M, Dobnik D, Ramšak Ž, Baebler Š, Pollmann S, Kreuze JF, Žel J, Gruden K.

Front Plant Sci. 2017 Dec 22;8:2192. doi: 10.3389/fpls.2017.02192. eCollection 2017.

7.
8.

Detecting and characterizing microRNAs of diverse genomic origins via miRvial.

Xia J, Li L, Li T, Fang Z, Zhang K, Zhou J, Peng H, Zhang W.

Nucleic Acids Res. 2017 Dec 1;45(21):e176. doi: 10.1093/nar/gkx834.

9.

Non-coding RNAs and Their Roles in Stress Response in Plants.

Wang J, Meng X, Dobrovolskaya OB, Orlov YL, Chen M.

Genomics Proteomics Bioinformatics. 2017 Oct;15(5):301-312. doi: 10.1016/j.gpb.2017.01.007. Epub 2017 Oct 7. Review.

10.

Integrating transcriptome and microRNA analysis identifies genes and microRNAs for AHO-induced systemic acquired resistance in N. tabacum.

Chen Y, Dong J, Bennetzen JL, Zhong M, Yang J, Zhang J, Li S, Hao X, Zhang Z, Wang X.

Sci Rep. 2017 Oct 2;7(1):12504. doi: 10.1038/s41598-017-12249-y.

11.

Small RNA-Sequencing Links Physiological Changes and RdDM Process to Vegetative-to-Floral Transition in Apple.

Guo X, Ma Z, Zhang Z, Cheng L, Zhang X, Li T.

Front Plant Sci. 2017 May 29;8:873. doi: 10.3389/fpls.2017.00873. eCollection 2017.

12.

miRCat2: accurate prediction of plant and animal microRNAs from next-generation sequencing datasets.

Paicu C, Mohorianu I, Stocks M, Xu P, Coince A, Billmeier M, Dalmay T, Moulton V, Moxon S.

Bioinformatics. 2017 Aug 15;33(16):2446-2454. doi: 10.1093/bioinformatics/btx210.

13.
14.

Analysis of high iron rice lines reveals new miRNAs that target iron transporters in roots.

Paul S, Gayen D, Datta SK, Datta K.

J Exp Bot. 2016 Oct;67(19):5811-5824. Epub 2016 Oct 11.

15.

MicroRNAs As Potential Targets for Abiotic Stress Tolerance in Plants.

Shriram V, Kumar V, Devarumath RM, Khare TS, Wani SH.

Front Plant Sci. 2016 Jun 14;7:817. doi: 10.3389/fpls.2016.00817. eCollection 2016. Review.

16.

Effect of microRNA-21 on the proliferation of human degenerated nucleus pulposus by targeting programmed cell death 4.

Chen B, Huang SG, Ju L, Li M, Nie FF, Zhang Y, Zhang YH, Chen X, Gao F.

Braz J Med Biol Res. 2016 May 24;49(6). pii: S0100-879X2016000600602. doi: 10.1590/1414-431X20155020.

17.
18.

miRNA Digger: a comprehensive pipeline for genome-wide novel miRNA mining.

Yu L, Shao C, Ye X, Meng Y, Zhou Y, Chen M.

Sci Rep. 2016 Jan 6;6:18901. doi: 10.1038/srep18901.

19.

Role of bioinformatics in establishing microRNAs as modulators of abiotic stress responses: the new revolution.

Tripathi A, Goswami K, Sanan-Mishra N.

Front Physiol. 2015 Oct 26;6:286. doi: 10.3389/fphys.2015.00286. eCollection 2015. Review.

20.

Small RNAs in Plant Responses to Abiotic Stresses: Regulatory Roles and Study Methods.

Ku YS, Wong JW, Mui Z, Liu X, Hui JH, Chan TF, Lam HM.

Int J Mol Sci. 2015 Oct 15;16(10):24532-54. doi: 10.3390/ijms161024532. Review.

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