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Items: 8

1.

Bioinformatic analysis of endogenous and exogenous small RNAs on lipoproteins.

Allen RM, Zhao S, Ramirez Solano MA, Zhu W, Michell DL, Wang Y, Shyr Y, Sethupathy P, Linton MF, Graf GA, Sheng Q, Vickers KC.

J Extracell Vesicles. 2018 Aug 13;7(1):1506198. doi: 10.1080/20013078.2018.1506198. eCollection 2018.

2.

Oasis 2: improved online analysis of small RNA-seq data.

Rahman RU, Gautam A, Bethune J, Sattar A, Fiosins M, Magruder DS, Capece V, Shomroni O, Bonn S.

BMC Bioinformatics. 2018 Feb 14;19(1):54. doi: 10.1186/s12859-018-2047-z.

3.

PinAPL-Py: A comprehensive web-application for the analysis of CRISPR/Cas9 screens.

Spahn PN, Bath T, Weiss RJ, Kim J, Esko JD, Lewis NE, Harismendy O.

Sci Rep. 2017 Nov 20;7(1):15854. doi: 10.1038/s41598-017-16193-9.

4.

Web-based NGS data analysis using miRMaster: a large-scale meta-analysis of human miRNAs.

Fehlmann T, Backes C, Kahraman M, Haas J, Ludwig N, Posch AE, Würstle ML, Hübenthal M, Franke A, Meder B, Meese E, Keller A.

Nucleic Acids Res. 2017 Sep 6;45(15):8731-8744. doi: 10.1093/nar/gkx595.

5.

phylo-node: A molecular phylogenetic toolkit using Node.js.

O'Halloran DM.

PLoS One. 2017 Apr 14;12(4):e0175480. doi: 10.1371/journal.pone.0175480. eCollection 2017.

6.

CPSS 2.0: a computational platform update for the analysis of small RNA sequencing data.

Wan C, Gao J, Zhang H, Jiang X, Zang Q, Ban R, Zhang Y, Shi Q.

Bioinformatics. 2017 Oct 15;33(20):3289-3291. doi: 10.1093/bioinformatics/btx066.

7.

Extracellular vesicles released by hepatocytes from gastric infusion model of alcoholic liver disease contain a MicroRNA barcode that can be detected in blood.

Eguchi A, Lazaro RG, Wang J, Kim J, Povero D, Willliams B, Ho SB, Stärkel P, Schnabl B, Ohno-Machado L, Tsukamoto H, Feldstein AE.

Hepatology. 2017 Feb;65(2):475-490. doi: 10.1002/hep.28838. Epub 2016 Nov 10.

8.

Oasis: online analysis of small RNA deep sequencing data.

Capece V, Garcia Vizcaino JC, Vidal R, Rahman RU, Pena Centeno T, Shomroni O, Suberviola I, Fischer A, Bonn S.

Bioinformatics. 2015 Jul 1;31(13):2205-7. doi: 10.1093/bioinformatics/btv113. Epub 2015 Feb 19.

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