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Items: 20

1.

mirDIP 4.1-integrative database of human microRNA target predictions.

Tokar T, Pastrello C, Rossos AEM, Abovsky M, Hauschild AC, Tsay M, Lu R, Jurisica I.

Nucleic Acids Res. 2018 Jan 4;46(D1):D360-D370. doi: 10.1093/nar/gkx1144.

2.

Natural antisense transcripts drive a regulatory cascade controlling c-MYC transcription.

Napoli S, Piccinelli V, Mapelli SN, Pisignano G, Catapano CV.

RNA Biol. 2017 Dec 2;14(12):1742-1755. doi: 10.1080/15476286.2017.1356564. Epub 2017 Oct 11.

3.

Recent computational developments on CLIP-seq data analysis and microRNA targeting implications.

Bottini S, Pratella D, Grandjean V, Repetto E, Trabucchi M.

Brief Bioinform. 2018 Nov 27;19(6):1290-1301. doi: 10.1093/bib/bbx063. Review.

4.

Altered expression of miR-181a and miR-146a does not change the expression of surface NCRs in human NK cells.

Rady M, Watzl C, Claus M, Khorshid O, Mahran L, Abou-Aisha K.

Sci Rep. 2017 Feb 1;7:41381. doi: 10.1038/srep41381.

5.

RAIN: RNA-protein Association and Interaction Networks.

Junge A, Refsgaard JC, Garde C, Pan X, Santos A, Alkan F, Anthon C, von Mering C, Workman CT, Jensen LJ, Gorodkin J.

Database (Oxford). 2017 Jan 10;2017. doi: 10.1093/database/baw167. Print 2017. Erratum in: Database (Oxford). 2017 Jan 1;2017(1):.

6.

Joint Profiling of miRNAs and mRNAs Reveals miRNA Mediated Gene Regulation in the Göttingen Minipig Obesity Model.

Mentzel CM, Alkan F, Keinicke H, Jacobsen MJ, Gorodkin J, Fredholm M, Cirera S.

PLoS One. 2016 Nov 30;11(11):e0167285. doi: 10.1371/journal.pone.0167285. eCollection 2016.

7.

Discovering MicroRNA-Regulatory Modules in Multi-Dimensional Cancer Genomic Data: A Survey of Computational Methods.

Walsh CJ, Hu P, Batt J, Dos Santos CC.

Cancer Inform. 2016 Oct 3;15(Suppl 2):25-42. eCollection 2016. Review.

8.

STarMir Tools for Prediction of microRNA Binding Sites.

Kanoria S, Rennie W, Liu C, Carmack CS, Lu J, Ding Y.

Methods Mol Biol. 2016;1490:73-82. doi: 10.1007/978-1-4939-6433-8_6.

10.

STarMirDB: A database of microRNA binding sites.

Rennie W, Kanoria S, Liu C, Mallick B, Long D, Wolenc A, Carmack CS, Lu J, Ding Y.

RNA Biol. 2016 Jun 2;13(6):554-60. doi: 10.1080/15476286.2016.1182279.

11.

Tumor suppressor microRNAs are downregulated in myelodysplastic syndrome with spliceosome mutations.

Aslan D, Garde C, Nygaard MK, Helbo AS, Dimopoulos K, Hansen JW, Severinsen MT, Treppendahl MB, Sjø LD, Grønbæk K, Kristensen LS.

Oncotarget. 2016 Mar 1;7(9):9951-63. doi: 10.18632/oncotarget.7127.

12.

Impact of microRNA-130a on the neutrophil proteome.

Pedersen CC, Refsgaard JC, Østergaard O, Jensen LJ, Heegaard NH, Borregaard N, Cowland JB.

BMC Immunol. 2015 Nov 25;16:70. doi: 10.1186/s12865-015-0134-8.

13.

Bioinformatic tools for microRNA dissection.

Akhtar MM, Micolucci L, Islam MS, Olivieri F, Procopio AD.

Nucleic Acids Res. 2016 Jan 8;44(1):24-44. doi: 10.1093/nar/gkv1221. Epub 2015 Nov 17. Review.

14.

MtiBase: a database for decoding microRNA target sites located within CDS and 5'UTR regions from CLIP-Seq and expression profile datasets.

Guo ZW, Xie C, Yang JR, Li JH, Yang JH, Zheng L.

Database (Oxford). 2015;2015. pii: bav102. doi: 10.1093/database/bav102.

15.

Circular RNA of the human sphingomyelin synthase 1 gene: Multiple splice variants, evolutionary conservatism and expression in different tissues.

Filippenkov IB, Sudarkina OY, Limborska SA, Dergunova LV.

RNA Biol. 2015;12(9):1030-42. doi: 10.1080/15476286.2015.1076611.

16.

Computational challenges, tools, and resources for analyzing co- and post-transcriptional events in high throughput.

Bahrami-Samani E, Vo DT, de Araujo PR, Vogel C, Smith AD, Penalva LO, Uren PJ.

Wiley Interdiscip Rev RNA. 2015 May-Jun;6(3):291-310. doi: 10.1002/wrna.1274. Epub 2014 Dec 16. Review.

17.

Associations between variants of the HAL gene and milk production traits in Chinese Holstein cows.

Wang H, Jiang L, Wang W, Zhang S, Yin Z, Zhang Q, Liu JF.

BMC Genet. 2014 Nov 25;15:125. doi: 10.1186/s12863-014-0125-4.

18.

Computational Methods for MicroRNA Target Prediction.

Ekimler S, Sahin K.

Genes (Basel). 2014 Aug 22;5(3):671-83. doi: 10.3390/genes5030671. Review.

19.

MicroRNAs in the Stressed Heart: Sorting the Signal from the Noise.

Matkovich SJ.

Cells. 2014 Aug 5;3(3):778-801. doi: 10.3390/cells3030778. Review.

20.

MicroRNA binding sites in C. elegans 3' UTRs.

Liu C, Rennie WA, Mallick B, Kanoria S, Long D, Wolenc A, Carmack CS, Ding Y.

RNA Biol. 2014;11(6):693-701. Epub 2014 Apr 25.

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