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Items: 1 to 20 of 28

1.

MiR-221 negatively regulates innate anti-viral response.

Du H, Cui S, Li Y, Yang G, Wang P, Fikrig E, You F.

PLoS One. 2018 Aug 8;13(8):e0200385. doi: 10.1371/journal.pone.0200385. eCollection 2018.

2.

Assessing the functional association of intronic miRNAs with their host genes.

Steiman-Shimony A, Shtrikman O, Margalit H.

RNA. 2018 Aug;24(8):991-1004. doi: 10.1261/rna.064386.117. Epub 2018 May 11.

3.

Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas.

Campbell JD, Yau C, Bowlby R, Liu Y, Brennan K, Fan H, Taylor AM, Wang C, Walter V, Akbani R, Byers LA, Creighton CJ, Coarfa C, Shih J, Cherniack AD, Gevaert O, Prunello M, Shen H, Anur P, Chen J, Cheng H, Hayes DN, Bullman S, Pedamallu CS, Ojesina AI, Sadeghi S, Mungall KL, Robertson AG, Benz C, Schultz A, Kanchi RS, Gay CM, Hegde A, Diao L, Wang J, Ma W, Sumazin P, Chiu HS, Chen TW, Gunaratne P, Donehower L, Rader JS, Zuna R, Al-Ahmadie H, Lazar AJ, Flores ER, Tsai KY, Zhou JH, Rustgi AK, Drill E, Shen R, Wong CK; Cancer Genome Atlas Research Network, Stuart JM, Laird PW, Hoadley KA, Weinstein JN, Peto M, Pickering CR, Chen Z, Van Waes C.

Cell Rep. 2018 Apr 3;23(1):194-212.e6. doi: 10.1016/j.celrep.2018.03.063.

4.

Transcriptome integration analysis in hepatocellular carcinoma reveals discordant intronic miRNA-host gene pairs in expression.

Sun Y, Ji F, Kumar MR, Zheng X, Xiao Y, Liu N, Shi J, Wong L, Forgues M, Qin LX, Tang ZY, Zhao X, Wang XW, Ji J.

Int J Biol Sci. 2017 Nov 1;13(11):1438-1449. doi: 10.7150/ijbs.20836. eCollection 2017.

5.

Regulating microRNA expression: at the heart of diabetes mellitus and the mitochondrion.

Hathaway QA, Pinti MV, Durr AJ, Waris S, Shepherd DL, Hollander JM.

Am J Physiol Heart Circ Physiol. 2018 Feb 1;314(2):H293-H310. doi: 10.1152/ajpheart.00520.2017. Epub 2017 Oct 6. Review.

6.

Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma.

Robertson AG, Shih J, Yau C, Gibb EA, Oba J, Mungall KL, Hess JM, Uzunangelov V, Walter V, Danilova L, Lichtenberg TM, Kucherlapati M, Kimes PK, Tang M, Penson A, Babur O, Akbani R, Bristow CA, Hoadley KA, Iype L, Chang MT; TCGA Research Network, Cherniack AD, Benz C, Mills GB, Verhaak RGW, Griewank KG, Felau I, Zenklusen JC, Gershenwald JE, Schoenfield L, Lazar AJ, Abdel-Rahman MH, Roman-Roman S, Stern MH, Cebulla CM, Williams MD, Jager MJ, Coupland SE, Esmaeli B, Kandoth C, Woodman SE.

Cancer Cell. 2017 Aug 14;32(2):204-220.e15. doi: 10.1016/j.ccell.2017.07.003. Erratum in: Cancer Cell. 2018 Jan 8;33(1):151.

7.

Methods of MicroRNA Promoter Prediction and Transcription Factor Mediated Regulatory Network.

Zhao Y, Wang F, Chen S, Wan J, Wang G.

Biomed Res Int. 2017;2017:7049406. doi: 10.1155/2017/7049406. Epub 2017 Jun 5. Review.

8.

Identification of active miRNA promoters from nuclear run-on RNA sequencing.

Liu Q, Wang J, Zhao Y, Li CI, Stengel KR, Acharya P, Johnston G, Hiebert SW, Shyr Y.

Nucleic Acids Res. 2017 Jul 27;45(13):e121. doi: 10.1093/nar/gkx318.

9.

Unveiling the Impact of the Genomic Architecture on the Evolution of Vertebrate microRNAs.

França GS, Hinske LC, Galante PA, Vibranovski MD.

Front Genet. 2017 Mar 21;8:34. doi: 10.3389/fgene.2017.00034. eCollection 2017. Review.

10.

FARNA: knowledgebase of inferred functions of non-coding RNA transcripts.

Alam T, Uludag M, Essack M, Salhi A, Ashoor H, Hanks JB, Kapfer C, Mineta K, Gojobori T, Bajic VB.

Nucleic Acids Res. 2017 Mar 17;45(5):2838-2848. doi: 10.1093/nar/gkw973.

11.

Satb2 determines miRNA expression and long-term memory in the adult central nervous system.

Jaitner C, Reddy C, Abentung A, Whittle N, Rieder D, Delekate A, Korte M, Jain G, Fischer A, Sananbenesi F, Cera I, Singewald N, Dechant G, Apostolova G.

Elife. 2016 Nov 29;5. pii: e17361. doi: 10.7554/eLife.17361.

12.
13.

Frequent hypermethylation of orphan CpG islands with enhancer activity in cancer.

Bae MG, Kim JY, Choi JK.

BMC Med Genomics. 2016 Aug 12;9 Suppl 1:38. doi: 10.1186/s12920-016-0198-1.

14.

Cytoplasmic Drosha activity generated by alternative splicing.

Dai L, Chen K, Youngren B, Kulina J, Yang A, Guo Z, Li J, Yu P, Gu S.

Nucleic Acids Res. 2016 Dec 1;44(21):10454-10466. Epub 2016 Jul 28.

15.

Principles of microRNA Regulation Revealed Through Modeling microRNA Expression Quantitative Trait Loci.

Budach S, Heinig M, Marsico A.

Genetics. 2016 Aug;203(4):1629-40. doi: 10.1534/genetics.116.187153. Epub 2016 Jun 3.

16.

Unveiling MYCN regulatory networks in neuroblastoma via integrative analysis of heterogeneous genomics data.

Hsu CL, Chang HY, Chang JY, Hsu WM, Huang HC, Juan HF.

Oncotarget. 2016 Jun 14;7(24):36293-36310. doi: 10.18632/oncotarget.9202.

17.

Host gene constraints and genomic context impact the expression and evolution of human microRNAs.

França GS, Vibranovski MD, Galante PA.

Nat Commun. 2016 Apr 25;7:11438. doi: 10.1038/ncomms11438.

18.

Small Genetic Circuits and MicroRNAs: Big Players in Polymerase II Transcriptional Control in Plants.

Megraw M, Cumbie JS, Ivanchenko MG, Filichkin SA.

Plant Cell. 2016 Feb;28(2):286-303. doi: 10.1105/tpc.15.00852. Epub 2016 Feb 11. Review.

19.

Transcriptional, post-transcriptional and chromatin-associated regulation of pri-miRNAs, pre-miRNAs and moRNAs.

Nepal C, Coolen M, Hadzhiev Y, Cussigh D, Mydel P, Steen VM, Carninci P, Andersen JB, Bally-Cuif L, Müller F, Lenhard B.

Nucleic Acids Res. 2016 Apr 20;44(7):3070-81. doi: 10.1093/nar/gkv1354. Epub 2015 Dec 15.

20.

PC-TraFF: identification of potentially collaborating transcription factors using pointwise mutual information.

Meckbach C, Tacke R, Hua X, Waack S, Wingender E, Gültas M.

BMC Bioinformatics. 2015 Dec 1;16:400. doi: 10.1186/s12859-015-0827-2.

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